SRR2933386.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933386.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	336323
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCG	13781	4.097549082281021	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGC	12004	3.569187953247325	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11719	3.4844479860134454	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTC	10670	3.1725454399490967	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCTACAGGT	2840	0.8444263401551485	No Hit
GAACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCT	2563	0.762065038668185	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTC	2558	0.7605783725763626	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTA	2535	0.7537397085539793	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCT	2328	0.6921917323525302	No Hit
GCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	2174	0.6464024167243988	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCTACAGGTCGT	865	0.25719323388528287	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTAT	628	0.18672526113289903	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTT	619	0.18404926216761863	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATG	587	0.17453459917995498	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	383	0.11387862263359924	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTCTACAGG	375	0.11149995688668334	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	358	0.10644529217448703	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	20	7.026163E-4	45.0	5
ATGGGAC	20	7.026163E-4	45.0	5
GATACCG	20	7.026163E-4	45.0	27
CAAACCG	20	7.026163E-4	45.0	30
CACGCTC	25	3.8849008E-5	45.0	41
ACGGGAT	35	1.2085002E-7	45.0	5
GCGATGC	25	3.8849008E-5	45.0	9
TCGTAGG	20	7.026163E-4	45.0	2
CCGACCA	20	7.026163E-4	45.0	34
CCGGTGA	55	1.8189894E-12	45.0	18
TGCGTCG	20	7.026163E-4	45.0	1
AAATGCG	25	3.8849008E-5	45.0	40
TACGGTG	30	2.1609067E-6	44.999996	7
AGGGTAT	30	2.1609067E-6	44.999996	6
CTACGGC	30	2.1609067E-6	44.999996	6
CGTTTTT	9450	0.0	44.5	1
CGATGAA	370	0.0	44.391895	19
CCGATGA	365	0.0	44.38356	18
ACGGCTG	1645	0.0	43.49544	8
TACGGCT	1660	0.0	43.237953	7