SRR2933379.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933379.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	185849
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11538	6.2082658502332535	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCG	5025	2.703807930093786	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGC	4032	2.1695031988334614	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTC	2016	1.0847515994167307	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAACGACGT	1173	0.631157552636818	No Hit
GCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	1117	0.6010255637641311	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAACGACGTCGTA	502	0.2701117573944439	No Hit
GAACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCT	500	0.26903561493470507	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTC	460	0.24751276573992867	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCT	408	0.21953306178671933	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCAAACGACGTCGTATGCCG	384	0.20661935226985345	No Hit
CTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT	313	0.16841629494912538	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAAACGACGTCGT	211	0.11353302950244554	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	204	0.10976653089335967	No Hit
GAATCTTTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTC	200	0.10761424597388201	No Hit
CCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	193	0.10384774736479614	No Hit
TCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	190	0.10223353367518793	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCACCG	175	0.0	45.000004	14
CTTAATG	20	7.0180104E-4	45.0	45
TCTTGCG	40	6.7611836E-9	45.0	1
CTCGTTG	25	3.8781487E-5	45.0	1
CACGGGA	20	7.0180104E-4	45.0	4
ACCGCTG	20	7.0180104E-4	45.0	17
TCGGGCA	20	7.0180104E-4	45.0	5
TTATACG	25	3.8781487E-5	45.0	26
GCACACA	20	7.0180104E-4	45.0	9
CGGTGAC	20	7.0180104E-4	45.0	19
CCGGTGA	25	3.8781487E-5	45.0	18
ACCCGTC	20	7.0180104E-4	45.0	17
GAACATG	25	3.8781487E-5	45.0	9
ATACGGA	20	7.0180104E-4	45.0	28
GGATTAG	20	7.0180104E-4	45.0	8
GGCGACT	100	0.0	45.0	10
CCGCCTC	35	1.2045894E-7	45.0	15
CACCCGT	25	3.8781487E-5	45.0	16
GCGACCT	65	0.0	44.999996	11
CCTCGGG	30	2.1556534E-6	44.999996	3