SRR2933376.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933376.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	411962
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG	14299	3.470951204237284	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	11238	2.727921507323491	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC	11147	2.7058320913093925	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10725	2.603395458804453	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGGTTTGTT	2702	0.6558857370339983	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTC	2409	0.5847626722853079	No Hit
GAACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCT	2406	0.5840344497793486	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCT	2256	0.5476233244813843	No Hit
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2202	0.5345153193741171	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTA	2123	0.5153387933838558	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGT	811	0.1968628174443274	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTT	629	0.15268398541613062	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTAT	532	0.12913812439011366	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATG	454	0.11020433923517217	No Hit
GCGCGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	422	0.10243663250493978	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAATG	20	7.02801E-4	45.000004	1
GCGATTC	40	6.7975634E-9	45.000004	9
CCGACAG	20	7.02801E-4	45.000004	43
CTCACCA	25	3.8864335E-5	45.0	31
ACGGGAG	50	2.1827873E-11	45.0	5
GCGGGTA	45	3.8380676E-10	45.0	5
ATCGAGT	25	3.8864335E-5	45.0	42
AATCGAG	25	3.8864335E-5	45.0	41
CATATGC	60	0.0	44.999996	33
CGTTTTT	9205	0.0	44.193375	1
ACGGCTG	1415	0.0	42.61484	8
TACGGCT	1410	0.0	42.606384	7
GAATCTG	1275	0.0	42.352943	1
CGGCTGT	1435	0.0	42.33449	9
CCGATGA	420	0.0	42.32143	18
CGATGAA	415	0.0	42.289158	19
TGATACC	1840	0.0	42.187496	4
GATACCT	1845	0.0	41.95122	5
GAATGAC	340	0.0	41.691177	1
GCCAGTA	65	0.0	41.538464	25