SRR2933375.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933375.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	285927
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16937	5.923539924526191	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG	6810	2.3817268043941286	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC	4394	1.5367558852434362	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	3461	1.210448820852875	No Hit
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	1431	0.5004773945797354	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGGTTTGTT	1349	0.47179874583372683	No Hit
GAACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCT	1029	0.3598820678005225	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTC	751	0.2626544537591763	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTA	717	0.25076330671814834	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCT	588	0.20564689588601284	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCGGTTTGTTCGTATGCCG	513	0.1794164244719806	No Hit
CTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	385	0.1346497532586989	Illumina Single End Adapter 1 (95% over 21bp)
GAATCTTTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	351	0.12275860621767094	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTTG	60	0.0	45.000004	1
ACCGGTA	20	7.024387E-4	45.0	41
TAGCGGG	40	6.7848305E-9	45.0	3
GATCTTA	20	7.024387E-4	45.0	9
AAGTGCG	50	2.1827873E-11	45.0	12
CGTTTTT	7565	0.0	44.553867	1
GATACCT	925	0.0	43.2973	5
TACGGCT	645	0.0	42.90698	7
TGATACC	940	0.0	42.606384	4
ATACCTG	955	0.0	42.40838	6
GAATGAT	2635	0.0	42.26755	1
ACGGCTG	655	0.0	42.251907	8
TGTTCGG	80	0.0	42.1875	2
ATGATAC	2530	0.0	41.79842	3
CCGATGA	135	0.0	41.666664	18
AATGATA	2525	0.0	41.524757	2
ACCACCG	335	0.0	40.97015	14
CGATGAA	110	0.0	40.909092	19
GTTGATC	50	1.0750227E-9	40.5	16
GGTACCT	50	1.0750227E-9	40.5	8