SRR2933372.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933372.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	411386
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCG	13586	3.302494494221971	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13091	3.1821695439319764	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGC	11768	2.860573767702353	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTC	11062	2.6889587880968238	No Hit
GCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	2502	0.6081879305567034	Illumina PCR Primer Index 6 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCT	2484	0.6038124778188855	Illumina PCR Primer Index 6 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGCATAACT	2459	0.5977354601274716	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTC	2419	0.5880122318212093	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGCATAACTCGTA	2400	0.5833936983757347	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCT	2109	0.5126572124476768	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGCATAACTCGT	919	0.22339117033637507	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTT	778	0.18911679055680067	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATCTGTCTCTT	669	0.16262099342223604	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATCTGT	669	0.16262099342223604	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATCT	598	0.14536226317862058	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTAT	537	0.13053434001157063	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATG	504	0.1225126766589043	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	25	3.886423E-5	45.000004	14
TCATACC	25	3.886423E-5	45.000004	27
TAATACC	20	7.027999E-4	45.0	4
CGTATAC	20	7.027999E-4	45.0	32
CCGATTA	20	7.027999E-4	45.0	18
CGTTCAT	20	7.027999E-4	45.0	17
CTCGACA	20	7.027999E-4	45.0	30
CACAACG	20	7.027999E-4	45.0	12
TAAGCTA	20	7.027999E-4	45.0	13
CGTTTTT	9465	0.0	44.500793	1
GAATGAC	295	0.0	43.474575	1
CACCGGT	110	0.0	42.954544	16
CGATGAA	320	0.0	42.890625	19
GTATGAT	105	0.0	42.857143	1
GATACCT	1660	0.0	42.831326	5
TACGGCT	1595	0.0	42.31975	7
ACGGCTG	1595	0.0	42.31975	8
CGGCTGT	1595	0.0	42.31975	9
CCGATGA	325	0.0	42.230766	18
TGATACC	1695	0.0	41.9469	4