##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933372.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 411386 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.379786866835527 31.0 28.0 31.0 25.0 34.0 2 28.46457584847321 31.0 26.0 33.0 16.0 34.0 3 28.443797309582727 31.0 26.0 33.0 16.0 34.0 4 33.05720661373989 35.0 32.0 37.0 28.0 37.0 5 34.215461877652615 35.0 33.0 37.0 30.0 37.0 6 33.45199156023783 35.0 32.0 37.0 28.0 37.0 7 33.55964714404477 35.0 32.0 37.0 29.0 37.0 8 33.39436441687369 35.0 33.0 37.0 28.0 37.0 9 34.671583379113535 37.0 34.0 39.0 28.0 39.0 10 34.47103693368272 37.0 32.0 39.0 27.0 39.0 11 34.627663556854145 37.0 33.0 39.0 27.0 39.0 12 34.64555429693767 37.0 33.0 39.0 27.0 39.0 13 34.66125001823105 37.0 33.0 39.0 27.0 39.0 14 35.54303987009767 38.0 34.0 40.0 27.0 41.0 15 35.775434749845644 38.0 34.0 40.0 27.0 41.0 16 35.79134924377592 38.0 34.0 40.0 27.0 41.0 17 35.08193764493687 37.0 33.0 40.0 27.0 41.0 18 34.97312499696149 37.0 33.0 39.0 27.0 40.0 19 34.31957334474192 37.0 32.0 38.0 27.0 40.0 20 33.61860393887979 35.0 32.0 38.0 25.0 40.0 21 34.20574351096051 35.0 33.0 38.0 27.0 40.0 22 34.83030292717788 35.0 33.0 39.0 29.0 40.0 23 35.125373736588024 35.0 34.0 39.0 30.0 40.0 24 34.72002936414948 35.0 33.0 39.0 28.0 40.0 25 33.7513746214018 35.0 33.0 38.0 24.0 40.0 26 33.79328659701594 35.0 32.0 38.0 25.0 40.0 27 34.41408069307171 35.0 33.0 39.0 27.0 40.0 28 34.11202860573768 35.0 33.0 39.0 25.0 40.0 29 34.078191771231886 35.0 33.0 39.0 25.0 40.0 30 33.48291871867298 35.0 33.0 39.0 23.0 40.0 31 33.49919297205058 35.0 33.0 39.0 23.0 40.0 32 32.93387232428911 35.0 32.0 39.0 20.0 40.0 33 32.388399216307796 35.0 31.0 39.0 15.0 40.0 34 31.904729378248167 35.0 30.0 39.0 12.0 40.0 35 31.569866256994647 35.0 30.0 39.0 10.0 41.0 36 31.137870515768647 35.0 29.0 39.0 8.0 40.0 37 31.02044065670684 35.0 28.0 39.0 8.0 40.0 38 30.73672414715134 35.0 27.0 39.0 8.0 40.0 39 30.332096862800388 35.0 25.0 39.0 7.0 40.0 40 30.0142834223819 35.0 23.0 39.0 7.0 40.0 41 29.44901139076196 35.0 22.0 39.0 7.0 40.0 42 29.849241345111405 35.0 23.0 39.0 7.0 40.0 43 29.795804913147265 35.0 23.0 39.0 7.0 40.0 44 29.99985658238248 35.0 23.0 39.0 7.0 40.0 45 30.081468499171095 35.0 23.0 39.0 7.0 40.0 46 29.875187779846666 35.0 23.0 39.0 7.0 40.0 47 29.70880632787698 35.0 23.0 39.0 7.0 40.0 48 29.631188227115167 35.0 23.0 38.0 7.0 40.0 49 29.880163641932395 35.0 24.0 39.0 7.0 40.0 50 29.738479189860616 35.0 24.0 39.0 7.0 40.0 51 28.489693377995362 33.0 22.0 37.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 9.0 9 12.0 10 18.0 11 25.0 12 28.0 13 39.0 14 60.0 15 122.0 16 196.0 17 378.0 18 814.0 19 1447.0 20 2267.0 21 3383.0 22 4778.0 23 6960.0 24 9945.0 25 14338.0 26 18463.0 27 19859.0 28 19708.0 29 19046.0 30 20200.0 31 22771.0 32 26023.0 33 30257.0 34 33447.0 35 37751.0 36 40872.0 37 41491.0 38 31953.0 39 4726.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.35109118929667 2.4203546061363292 31.086619379366336 35.141934825200664 2 34.52645447341426 19.989985074844547 31.80297822483021 13.680582226910978 3 12.382045086609656 20.140695113591615 53.894882178781 13.58237762101773 4 11.450073653454421 2.8654353818554834 69.79576358942697 15.888727375263134 5 24.50934159159524 3.321940950834496 54.334129017516396 17.834588440053867 6 13.727253722781038 17.38051367815142 58.10382463185427 10.788407967213274 7 52.22613312071874 1.358091913677179 43.55957665063955 2.8561983149645345 8 50.826231325324635 13.5126134579203 31.789851866616754 3.871303350138313 9 47.743724871531846 2.9799263951617214 30.871492953090286 18.40485578021615 10 32.02053545818283 17.212301828453082 37.45241695147623 13.314745761887862 11 27.68859416703534 15.055446709416461 43.445571798748624 13.810387324799581 12 21.32328275634076 13.194663892305522 45.89509608980374 19.58695726154998 13 19.818370095239022 14.350512657212446 53.85161381281813 11.979503434730399 14 16.765519487780335 20.549313783162283 45.022193268609044 17.662973460448338 15 12.375968068918242 14.797781159300511 57.11934776584522 15.706903005936033 16 15.908659993290971 16.936891386678205 43.52603151298294 23.628417107047884 17 16.84330531423043 17.1165280296364 49.721186428317935 16.31898022781524 18 16.463370168163234 16.118924805413894 48.00236274447842 19.41534228194445 19 16.492296772374363 19.157919812536157 44.075393912286756 20.27438950280272 20 17.366658077814996 19.470764683290145 50.621071208062496 12.541506030832355 21 17.414544977223336 23.817776978312338 45.26260008848138 13.505077955982944 22 14.840077202432752 14.722669220634636 49.977393494187936 20.459860082744676 23 15.388953440321254 22.767668321236016 47.49140709698434 14.351971141458385 24 17.974359846956386 17.604391009903107 43.31041892529158 21.11083021784893 25 15.806809176782878 26.62049753759243 41.142139012995095 16.4305542726296 26 15.642000456991731 15.44729281015883 46.66007107679892 22.25063565605052 27 18.317589806167444 18.47389070119061 43.298507970616406 19.910011522025542 28 13.261024925495763 18.63553937178222 48.132167842367025 19.971267860354995 29 22.3240460297628 16.930085126863823 42.03667601717122 18.709192826202155 30 19.34727968380062 21.11933804261691 44.906243771056864 14.627138502525607 31 20.02741950382366 17.375408983290633 40.1209569601299 22.476214552755806 32 22.79659492544715 24.336025047036117 38.67754371806527 14.189836309451465 33 18.730583928475934 17.744891658928598 39.61073055475879 23.91379385783668 34 23.827986368033915 23.617721555910993 37.02192101821647 15.532371057838624 35 19.910011522025542 25.51739728624698 35.34466413538623 19.227927056341247 36 21.622028946050666 22.017278176700227 32.74126975638452 23.61942312086459 37 20.989289864020652 27.636817976304496 35.34053176335607 16.033360396318784 38 19.86722931747799 22.60431808569081 34.59257242589685 22.935880170934354 39 21.007277836387235 28.635636604065283 32.31028766170944 18.04679789783804 40 20.314254738858395 24.69651373649079 37.67070342695182 17.318528097698998 41 18.320020613244008 26.702172655365036 31.08370241087446 23.894104320516497 42 17.800800221689606 25.502569363079928 38.15808024580321 18.538550169427253 43 20.764683290145992 20.396659098753968 33.13603282561876 25.702624785481277 44 22.664845181897295 21.312830285911527 34.707792681326055 21.314531850865123 45 17.70089405084276 20.977865070760792 34.33028834233542 26.990952536061023 46 23.455100562488756 24.455134593787832 31.715469170073845 20.374295673649563 47 15.589251943430257 20.944563013811845 44.12085000461853 19.345335038139364 48 19.753224465587063 25.584730642267843 32.24368354781155 22.418361344333544 49 18.134793114009714 21.279771309670238 39.56964991516483 21.015785661155217 50 19.74155659161955 19.887161935505826 36.10258978185937 24.268691691015253 51 19.302309752884153 21.244524607060036 33.820061936964315 25.633103703091503 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 42.0 1 582.0 2 1122.0 3 13804.0 4 26486.0 5 18943.5 6 11401.0 7 10689.5 8 9978.0 9 9568.5 10 9159.0 11 8751.0 12 8343.0 13 7760.5 14 7178.0 15 6701.5 16 6225.0 17 5715.5 18 5206.0 19 4804.0 20 4402.0 21 4172.0 22 3942.0 23 3819.0 24 3696.0 25 3745.0 26 3869.0 27 3944.0 28 4385.5 29 4827.0 30 5137.5 31 5448.0 32 6176.5 33 6905.0 34 7300.5 35 7696.0 36 7978.5 37 8261.0 38 8961.0 39 9661.0 40 10549.0 41 11437.0 42 13189.0 43 14941.0 44 16329.0 45 17717.0 46 42374.0 47 67031.0 48 46679.5 49 26328.0 50 24329.0 51 22330.0 52 19747.0 53 17164.0 54 17363.5 55 17563.0 56 17002.0 57 16441.0 58 15180.0 59 13919.0 60 12560.5 61 11202.0 62 10045.0 63 8888.0 64 7586.5 65 6285.0 66 5207.0 67 4129.0 68 3434.0 69 2739.0 70 2384.0 71 2029.0 72 1726.0 73 1423.0 74 1145.5 75 709.0 76 550.0 77 440.0 78 330.0 79 244.5 80 159.0 81 125.5 82 92.0 83 80.5 84 69.0 85 46.5 86 24.0 87 16.5 88 9.0 89 5.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 411386.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.40594200703487 #Duplication Level Percentage of deduplicated Percentage of total 1 81.53126916586942 35.38941541173678 2 5.909792379247717 5.13040210574486 3 2.720639770716246 3.5427579632922606 4 1.9038195604327786 3.305483257280152 5 1.5019264174236782 3.2596265486762905 6 1.235142000243133 3.2167501219803887 7 1.025224178542421 3.11505748666156 8 0.8160603773929102 2.8337495532284516 9 0.6756330292255909 2.639383927614296 >10 2.574917622998546 16.378099172651176 >50 0.06210323406326906 1.8727411393561002 >100 0.033874491307237665 2.5167562812335973 >500 0.003952023985844394 1.1454059258506166 >1k 0.0033874491307237667 3.5222334985560364 >5k 0.0 0.0 >10k+ 0.002258299420482511 12.132137606137459 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCG 13586 3.302494494221971 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13091 3.1821695439319764 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGC 11768 2.860573767702353 No Hit GAATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTC 11062 2.6889587880968238 No Hit GCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC 2502 0.6081879305567034 Illumina PCR Primer Index 6 (95% over 23bp) GAACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCT 2484 0.6038124778188855 Illumina PCR Primer Index 6 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGCATAACT 2459 0.5977354601274716 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTC 2419 0.5880122318212093 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGCATAACTCGTA 2400 0.5833936983757347 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCT 2109 0.5126572124476768 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGCATAACTCGT 919 0.22339117033637507 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTT 778 0.18911679055680067 No Hit GAATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATCTGTCTCTT 669 0.16262099342223604 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATCTGT 669 0.16262099342223604 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATCT 598 0.14536226317862058 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTAT 537 0.13053434001157063 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATG 504 0.1225126766589043 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09455839527840033 0.0 2 0.0 0.0 0.0 0.8935646813455004 0.0 3 0.0 0.0 0.0 1.011944985974243 0.0 4 0.0 0.0 0.0 1.8338008585610595 0.0 5 0.0 0.0 0.0 5.277039082516177 0.0 6 0.0 0.0 0.0 5.595231728838609 0.0 7 0.0 0.0 0.0 6.32641849746953 0.0 8 0.0 0.0 0.0 7.160914566854487 0.0 9 0.0 0.0 0.0 7.287316534835896 0.0 10 0.0 0.0 0.0 11.501120602062297 0.0 11 0.0 0.0 0.0 11.72815798301352 0.0 12 0.0 0.0 0.0 15.567374679741167 0.0 13 0.0 0.0 0.0 15.84254204080839 0.0 14 0.0 0.0 0.0 16.060342354868663 0.0 15 0.0 0.0 0.0 16.842819152815117 0.0 16 0.0 0.0 0.0 17.19747390528603 0.0 17 0.0 0.0 0.0 17.379541355320793 0.0 18 0.0 0.0 0.0 17.54216234874303 0.0 19 0.0 0.0 0.0 18.407286587292713 0.0 20 0.0 0.0 0.0 18.61220362384719 0.0 21 0.0 0.0 0.0 18.75902437127175 0.0 22 0.0 0.0 0.0 19.01717608280301 0.0 23 0.0 0.0 0.0 19.140661082292542 0.0 24 0.0 0.0 0.0 19.270223099473487 0.0 25 0.0 0.0 0.0 19.370858512443302 0.0 26 0.0 0.0 0.0 19.518165421283175 0.0 27 0.0 0.0 0.0 19.708497615378256 0.0 28 0.0 0.0 0.0 19.82493327434575 0.0 29 0.0 0.0 0.0 19.968350891863118 0.0 30 0.0 0.0 0.0 20.11565780070299 0.0 31 0.0 0.0 0.0 20.23549658957767 0.0 32 0.0 0.0 0.0 20.363843203220334 0.0 33 0.0 0.0 0.0 20.49462062393956 0.0 34 0.0 0.0 0.0 20.71631022932234 0.0 35 0.0 0.0 0.0 20.887682128220213 0.0 36 0.0 0.0 0.0 21.03741984413665 0.0 37 0.0 0.0 0.0 21.19420690057513 0.0 38 0.0 0.0 0.0 21.407874842605242 0.0 39 0.0 0.0 0.0 21.808714929530904 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAATAT 25 3.886423E-5 45.000004 14 TCATACC 25 3.886423E-5 45.000004 27 TAATACC 20 7.027999E-4 45.0 4 CGTATAC 20 7.027999E-4 45.0 32 CCGATTA 20 7.027999E-4 45.0 18 CGTTCAT 20 7.027999E-4 45.0 17 CTCGACA 20 7.027999E-4 45.0 30 CACAACG 20 7.027999E-4 45.0 12 TAAGCTA 20 7.027999E-4 45.0 13 CGTTTTT 9465 0.0 44.500793 1 GAATGAC 295 0.0 43.474575 1 CACCGGT 110 0.0 42.954544 16 CGATGAA 320 0.0 42.890625 19 GTATGAT 105 0.0 42.857143 1 GATACCT 1660 0.0 42.831326 5 TACGGCT 1595 0.0 42.31975 7 ACGGCTG 1595 0.0 42.31975 8 CGGCTGT 1595 0.0 42.31975 9 CCGATGA 325 0.0 42.230766 18 TGATACC 1695 0.0 41.9469 4 >>END_MODULE