SRR2933366.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933366.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	366007
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCG	16222	4.432155669153868	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGC	15365	4.198007141939908	No Hit
GAATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTC	14017	3.8297081749802597	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11171	3.0521274183280647	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAACGTTGGT	3446	0.9415120475837894	No Hit
GAACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCT	3138	0.8573606515722377	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTC	2944	0.8043562008376889	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTA	2943	0.8040829820194696	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCT	2685	0.7335925269188841	No Hit
GCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC	2516	0.6874185466398184	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGT	1186	0.3240375184081179	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTAT	804	0.21966792984833622	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATG	764	0.2087391771195633	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTT	757	0.20682664539202802	No Hit
CTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGCT	445	0.12158237410759903	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	406	0.11092684019704542	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCAACGTTGG	397	0.1084678708330715	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	20	7.026978E-4	45.000004	21
CTTCGTG	20	7.026978E-4	45.000004	1
CGACGAA	30	2.1614323E-6	45.000004	19
TAGTTGC	20	7.026978E-4	45.000004	14
TTATACG	20	7.026978E-4	45.000004	26
ACAGGCG	20	7.026978E-4	45.000004	33
TAGATTC	20	7.026978E-4	45.000004	19
CGGTAGC	20	7.026978E-4	45.000004	33
GATTCGC	20	7.026978E-4	45.000004	11
CCAGTAG	30	2.1614323E-6	45.000004	26
CGATCCA	20	7.026978E-4	45.000004	34
CGTCATA	20	7.026978E-4	45.000004	38
ACATTGA	25	3.8855786E-5	45.0	38
ACCGACG	25	3.8855786E-5	45.0	17
CAACCCG	25	3.8855786E-5	45.0	23
CGTTTTT	9970	0.0	44.435806	1
ACGGCTG	1815	0.0	43.76033	8
TACGGCT	1815	0.0	43.512398	7
CGATGAA	485	0.0	43.144333	19
GATACCT	1965	0.0	43.053432	5