FastQCFastQC Report
Sat 14 Jan 2017
SRR2933365.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933365.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences231684
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT152766.593463510643809No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCG81233.5060686106938763No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGC70023.022219920236184No Hit
GAATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTC49072.117971029505706No Hit
GCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC21420.9245351426943595No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAACGTTGGT19240.8304414633725247No Hit
GAACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCT17040.7354845392862692No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTA12280.5300322853541893No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTC11200.4834170680754821No Hit
GAATGACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCT7880.3401184371816785No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCAACGTTGGTCGTATGCCG6280.2710588560280382No Hit
CTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGCT5850.2524990935929974Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGT5250.22660175066038227No Hit
CCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC4260.1838711348215673No Hit
GAATCTTTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTC4130.17826004385283403No Hit
GAATGACTCTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCT3650.15754216950674194No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATG3490.1506362113913779No Hit
TCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC3480.15020458900916767No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTAT3200.1381191623072806No Hit
GAATGCTACGGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGC3090.13337131610296785No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCC3060.13207644895633708No Hit
GAATGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTT3050.13164482657412682No Hit
GAATGATACGGCTGCCTCCTATACACATCTGACGCAACGTTGGTCGTATGC2970.1281918475164448No Hit
GAATCTGTCTCTTATCCACATCTGACGCAACGTTGGTCGTATGCCGTCTTC2860.12344400131213205No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA2750.11869615510781927No Hit
GAATGCTACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCG2650.11437993128571675No Hit
GAATCTGTCTCTTATCCCCATCTGACGCAACGTTGGTCGTATGCCGTCTTC2590.11179019699245525No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA2520.10876884031698349No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGACCG302.1579744E-645.00000411
TAGGGAC302.1579744E-645.0000045
GCGAGAC207.021615E-445.021
ACCGGTG551.8189894E-1245.017
GGGCTTA207.021615E-445.07
GGCGTTT207.021615E-445.07
TATGGGC253.881134E-545.04
TATGGGA453.8198777E-1045.04
GATCCGT207.021615E-445.05
ATACTTC207.021615E-445.042
ATCCGTC207.021615E-445.06
TTATACG253.881134E-545.026
GTATGGC207.021615E-445.09
GCCCTCG207.021615E-445.020
GCGATTG253.881134E-545.09
ATGACTC502.1827873E-1145.03
TCCGTCT207.021615E-445.07
TGCTACG950.045.04
CTCCTAT502.1827873E-1145.016
CACCGGT650.044.99999616