SRR2933364.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933364.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	617430
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCG	25297	4.097144615583953	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22221	3.5989504883144647	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGC	21936	3.5527914095525	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTC	20126	3.2596407689940556	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTAGCTCCT	5199	0.84203877362616	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTC	4811	0.7791976418379412	No Hit
GAACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCT	4575	0.7409746853894369	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTA	4295	0.6956254150268046	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCT	4066	0.6585361903373662	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC	3827	0.6198273488492623	TruSeq Adapter, Index 20 (95% over 22bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGT	1612	0.26108222794486824	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATG	1139	0.18447435336799312	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTAT	1128	0.18269277488946115	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTT	1122	0.1817210048102619	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	678	0.10981001894951656	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	666	0.10786647879111803	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCAATAC	20	7.030746E-4	45.000004	16
TAGGGTA	20	7.030746E-4	45.000004	5
GCGATAT	20	7.030746E-4	45.000004	9
CGCACAT	20	7.030746E-4	45.000004	31
TAGTATA	20	7.030746E-4	45.000004	12
ACGGGAC	25	3.8887018E-5	45.0	5
GATACGC	30	2.1638643E-6	44.999996	5
CGTTTTT	16980	0.0	44.469963	1
GATACCT	3055	0.0	43.01146	5
TGATACC	3060	0.0	42.64706	4
CCGATGA	560	0.0	42.589287	18
TACGGCT	2625	0.0	42.514286	7
CGGCTGT	2680	0.0	42.229477	9
ACCGGTG	80	0.0	42.187504	17
ATACCTG	3120	0.0	42.1875	6
ACGGCTG	2660	0.0	42.039474	8
ACCGGTC	70	0.0	41.785717	17
TACGAAA	70	0.0	41.785717	20
ACATACG	70	0.0	41.785717	17
CGATGAA	585	0.0	41.153843	19