SRR2933359.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933359.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	296484
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16701	5.633018982474603	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG	3783	1.2759541830250536	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC	2907	0.9804913587242482	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTC	2350	0.7926228734096951	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	797	0.2688172043010753	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCT	775	0.26139690506064406	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTTCGCTT	740	0.2495918835417763	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTA	590	0.1989989341752	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTC	452	0.15245342075794985	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT	367	0.12378408278355663	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	350	0.11805021518867798	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCC	349	0.11771292885956745	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACGGG	30	2.1600335E-6	45.000004	3
TTTACGG	20	7.0248084E-4	45.0	2
TAGCGGG	35	1.2078453E-7	45.0	3
GGCAACG	20	7.0248084E-4	45.0	8
GGATACC	20	7.0248084E-4	45.0	8
TCGGAAC	20	7.0248084E-4	45.0	25
GGGCGTA	20	7.0248084E-4	45.0	7
CGTGTTT	20	7.0248084E-4	45.0	1
CCGTTGG	35	1.2078453E-7	45.0	2
CGTTTTT	6865	0.0	44.344498	1
TCGTTTG	120	0.0	43.125004	1
TACGGGG	80	0.0	42.1875	4
TGATACC	395	0.0	42.151897	4
GATACCT	395	0.0	41.582275	5
CGGGATA	55	6.002665E-11	40.909092	6
CTACGGG	50	1.0750227E-9	40.5	3
GGGTAAT	45	1.9199433E-8	40.000004	7
TACGGCT	400	0.0	39.9375	7
ACGGCTG	395	0.0	39.873417	8
GTTTTTT	7820	0.0	39.763428	2