SRR2933358.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933358.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	285645
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8469	2.9648689807278266	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCG	6535	2.2878047926622203	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTC	6003	2.101559628209841	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGC	5694	1.9933833954734022	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCT	1423	0.498170806420557	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGGACGAT	1312	0.45931138301038	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTC	1225	0.4288539970942954	No Hit
GCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	1164	0.40749881846347746	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGGACGATCGTA	1162	0.406798648672303	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCT	1081	0.37844177212974145	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTT	634	0.22195382380227205	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAAGGACGATCGT	499	0.17469236289800277	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATG	286	0.10012428013793345	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	20	7.024374E-4	45.000004	31
CGACCCT	20	7.024374E-4	45.000004	12
TGTTGCG	40	6.7848305E-9	45.000004	1
GCGATTA	20	7.024374E-4	45.000004	9
CGGGACG	20	7.024374E-4	45.000004	6
CACCCGT	40	6.7848305E-9	45.000004	16
TTCCGCG	25	3.883421E-5	45.0	1
CGGGCAA	25	3.883421E-5	45.0	6
ACGTAGA	25	3.883421E-5	45.0	15
CCCTCGG	30	2.1597534E-6	44.999996	2
TCCGCGG	30	2.1597534E-6	44.999996	2
CGTTTTT	6520	0.0	44.58589	1
CCGATGA	185	0.0	43.783783	18
CGATGAA	195	0.0	42.692307	19
TGATACC	740	0.0	42.567566	4
GGCACCG	85	0.0	42.35294	8
GCACCGA	85	0.0	42.35294	9
GATACCT	760	0.0	41.743423	5
GCGACCT	60	3.6379788E-12	41.249996	11
ACGGCTG	695	0.0	41.11511	8