SRR2933356.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933356.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	657834
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22558	3.4291325775195567	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTC	15169	2.305900880769313	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCG	13510	2.053709598470131	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGC	10632	1.6162132088034367	No Hit
GAACTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCT	3487	0.5300729363334823	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTC	2737	0.41606241088177265	No Hit
GCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTGC	2417	0.3674179200223765	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAAAGCTGT	2386	0.36270548497037247	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCT	2091	0.31786134495936663	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTA	1920	0.29186694515637684	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTT	1435	0.21814013869760457	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGT	878	0.13346832179546816	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	674	0.10245745887260312	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTACCG	40	6.8066583E-9	45.000004	14
ATACGTC	30	2.1640808E-6	45.000004	6
GGCGAAC	20	7.031083E-4	45.000004	32
TCGATCA	25	3.8889797E-5	45.0	17
TAGGGTA	35	1.2108649E-7	45.0	5
CGTTTTT	22855	0.0	44.24196	1
CGATGAA	500	0.0	43.649998	19
CCGATGA	500	0.0	42.749996	18
GATACCT	1595	0.0	42.319748	5
ACGGCTG	1475	0.0	41.79661	8
TGATACC	1610	0.0	41.785717	4
GTTTGCG	65	0.0	41.53846	1
CGGCTGT	1490	0.0	41.22483	9
GAATCTG	1845	0.0	41.219513	1
AATCTGT	1870	0.0	40.78877	2
TACGGCT	1510	0.0	40.5298	7
CGGGTAC	50	1.0804797E-9	40.5	6
CGACCTG	140	0.0	40.17857	12
CTACCGA	45	1.9261279E-8	40.0	15
ATACCTG	1700	0.0	39.97059	6