SRR2933355.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933355.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	392846
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25192	6.4126909781441075	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCG	5945	1.513315650407539	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGC	4097	1.0429023077745478	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTC	4026	1.0248290678790162	No Hit
GAACTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCT	1260	0.32073636997703936	No Hit
GCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTGC	1163	0.296044760542299	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAAAGCTGT	999	0.2542981219103669	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTC	783	0.19931474420001732	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTA	592	0.15069518335429152	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCT	487	0.12396715252287155	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCAAAGCTGTCGTATGCCG	482	0.1226943891499468	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTT	453	0.1153123615869832	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCC	434	0.11047586076986911	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	426	0.1084394393731895	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCT	40	6.7957444E-9	45.0	6
ACGGGCG	20	7.0276106E-4	45.0	5
GAGATCG	20	7.0276106E-4	45.0	20
CGTTTTT	14805	0.0	44.574467	1
TACGGCT	500	0.0	42.3	7
CCGGGAT	80	0.0	42.1875	5
CACCGGT	70	0.0	41.785713	16
CGACCAC	460	0.0	41.576084	12
TGATACC	700	0.0	41.464287	4
TATGGGC	60	3.6379788E-12	41.249996	4
TGCGGGC	170	0.0	41.02941	4
TCGGGAC	55	6.002665E-11	40.909092	5
GCGACCA	470	0.0	40.69149	11
ACGGCTG	520	0.0	40.67308	8
GTTTTTT	16325	0.0	40.658497	2
GAATGAT	2235	0.0	40.57047	1
GATACCT	710	0.0	40.563377	5
ATACGGC	1305	0.0	40.344826	6
AATGATA	2025	0.0	40.333332	2
ATGATAC	2035	0.0	40.245697	3