SRR2933354.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933354.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	568350
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15148	2.66525908331134	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTC	13660	2.4034485792205507	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCG	10277	1.8082167678367203	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGC	8314	1.462831002023401	No Hit
GAACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCT	3272	0.5757015923286707	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTC	2299	0.4045042667370458	No Hit
GCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGC	2083	0.3664995161432216	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGACCTTT	1808	0.31811383830386203	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCT	1639	0.28837863992258295	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTA	1634	0.2874989003255036	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTT	1291	0.2271487639658661	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTGACCTTTCGT	754	0.13266473123955308	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTGCG	40	6.8048394E-9	45.000004	1
TCCGTCT	20	7.0302724E-4	45.000004	7
CCCGATC	40	6.8048394E-9	45.000004	41
CGTTTTT	11460	0.0	44.05759	1
CCGATGA	310	0.0	42.82258	18
CACGACC	90	0.0	42.5	27
CGATGAA	315	0.0	42.142857	19
TGATACC	1195	0.0	41.799164	4
GATACCT	1185	0.0	41.772156	5
TACGGCT	920	0.0	40.84239	7
TTAGCGG	50	1.0786607E-9	40.5	2
TACCGGG	50	1.0786607E-9	40.5	3
ATACCTG	1230	0.0	40.2439	6
ACGGCTG	935	0.0	40.18717	8
AGGCACG	45	1.9254003E-8	40.0	10
GAATCTG	1720	0.0	39.898254	1
CGTTCAT	40	3.4541154E-7	39.375004	17
ATGATAC	3780	0.0	39.166668	3
GAATGAT	3970	0.0	38.992447	1
AATGATC	295	0.0	38.898304	2