SRR2933353.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933353.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	426656
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24296	5.694517362934073	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCG	5153	1.2077645691142278	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTC	4819	1.129481362034051	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGC	3618	0.8479899497487438	No Hit
GAACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCT	1646	0.38579089477236933	No Hit
GCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGC	1235	0.28946036150903776	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGACCTTT	950	0.22266181654541362	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTC	873	0.20461449036225907	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTA	592	0.1387534688367209	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTT	573	0.13430023250581266	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCT	534	0.1251593789844746	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGGTC	120	0.0	45.000004	12
CGAGACA	125	0.0	45.000004	22
CGATCCA	25	3.886668E-5	45.0	28
ACGAACA	20	7.0282957E-4	45.0	40
CGTTTTT	9595	0.0	44.24961	1
GACACGA	130	0.0	43.26923	25
TACGGCT	520	0.0	43.26923	7
TCAAGCG	125	0.0	43.2	17
GATACCT	725	0.0	42.517242	5
TGATACC	735	0.0	42.2449	4
CACGTGA	110	0.0	40.909092	43
GAATGAT	1970	0.0	40.54569	1
ATGATAC	1885	0.0	40.344826	3
GCGAGAC	140	0.0	40.17857	21
ACACGAC	140	0.0	40.17857	26
CGACCAA	140	0.0	40.17857	29
GTTTTTT	10715	0.0	40.04433	2
GGTAATC	45	1.9233994E-8	40.0	8
AATGATA	1890	0.0	40.0	2
ACGTGAG	120	0.0	39.375004	44