##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933351.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 531381 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.819666115273222 31.0 28.0 31.0 16.0 33.0 2 29.31763837999477 31.0 30.0 33.0 16.0 34.0 3 29.504976655168324 31.0 30.0 33.0 16.0 34.0 4 32.227761248520366 35.0 32.0 37.0 19.0 37.0 5 33.56764167330032 35.0 33.0 37.0 28.0 37.0 6 33.101889228256184 35.0 33.0 37.0 26.0 37.0 7 31.753284366584428 35.0 30.0 35.0 23.0 37.0 8 33.17204040039068 35.0 33.0 35.0 28.0 37.0 9 32.76514591225505 35.0 31.0 37.0 25.0 39.0 10 30.789627404818766 35.0 27.0 39.0 15.0 39.0 11 31.629087227431917 35.0 27.0 39.0 15.0 39.0 12 32.66792753222264 35.0 30.0 39.0 21.0 39.0 13 32.81583647138306 35.0 31.0 39.0 21.0 39.0 14 33.226824067853386 36.0 31.0 40.0 18.0 41.0 15 33.842611986503094 36.0 31.0 40.0 23.0 41.0 16 33.99742369411025 37.0 32.0 40.0 23.0 41.0 17 32.0202303055623 35.0 27.0 39.0 17.0 41.0 18 32.78017467692673 36.0 30.0 39.0 21.0 39.0 19 32.56289931329874 36.0 30.0 37.0 19.0 39.0 20 32.385890726239744 34.0 30.0 36.0 24.0 39.0 21 32.67077294822359 35.0 31.0 37.0 23.0 39.0 22 32.91504212608279 35.0 30.0 37.0 25.0 39.0 23 34.04112303601371 35.0 33.0 38.0 27.0 40.0 24 32.162457822165265 34.0 30.0 37.0 21.0 39.0 25 31.33536577333401 34.0 29.0 37.0 18.0 39.0 26 30.625983992653104 33.0 25.0 37.0 18.0 39.0 27 32.21910644151748 34.0 30.0 37.0 22.0 39.0 28 32.36896125378966 35.0 31.0 37.0 21.0 39.0 29 32.624316639096996 35.0 31.0 38.0 22.0 40.0 30 31.575459039747376 35.0 30.0 38.0 18.0 40.0 31 31.84865473172733 35.0 30.0 37.0 20.0 40.0 32 31.668307673778326 35.0 30.0 37.0 18.0 40.0 33 31.738169035023834 35.0 30.0 38.0 16.0 40.0 34 30.947903669871522 35.0 29.0 38.0 12.0 40.0 35 30.380741878238027 35.0 27.0 38.0 10.0 40.0 36 29.78073359792691 34.0 25.0 38.0 8.0 40.0 37 29.927912364198193 35.0 25.0 38.0 8.0 40.0 38 29.819299146939766 35.0 24.0 38.0 8.0 40.0 39 29.3831695149055 34.0 23.0 38.0 7.0 40.0 40 29.112967908148768 34.0 23.0 38.0 8.0 40.0 41 28.656365206885454 33.0 22.0 37.0 7.0 40.0 42 29.027377719564683 34.0 23.0 38.0 7.0 40.0 43 29.020239715006745 34.0 23.0 38.0 7.0 40.0 44 29.040855807791395 34.0 23.0 38.0 7.0 40.0 45 29.221515259296062 34.0 23.0 38.0 7.0 40.0 46 29.038207990123848 34.0 23.0 38.0 7.0 40.0 47 29.035959132900874 34.0 23.0 38.0 7.0 40.0 48 28.767069202700135 34.0 23.0 37.0 7.0 40.0 49 28.53908400940192 33.0 23.0 37.0 7.0 39.0 50 28.74116688402483 34.0 23.0 37.0 7.0 39.0 51 27.164209860721403 32.0 20.0 35.0 7.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 15.0 10 35.0 11 45.0 12 57.0 13 104.0 14 158.0 15 275.0 16 597.0 17 1074.0 18 1840.0 19 2984.0 20 4483.0 21 6411.0 22 8668.0 23 11935.0 24 16393.0 25 22342.0 26 27742.0 27 29728.0 28 29760.0 29 30736.0 30 33702.0 31 38219.0 32 43154.0 33 48141.0 34 53165.0 35 56245.0 36 39538.0 37 19798.0 38 3960.0 39 71.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.757386884363573 2.6653192342217733 37.267610245755876 40.309683635658786 2 40.493355991275564 8.178689113837342 37.435851112478616 13.89210378240848 3 13.761124315698153 8.25885758053073 63.04628882101543 14.933729282755687 4 12.27029193742343 3.122618234374206 67.01707437789459 17.59001545030778 5 16.377326249903554 3.5328700122887344 62.78056610981575 17.30923762799197 6 15.529723494065465 7.733057824799908 64.32503232144168 12.412186359692951 7 57.26136237464268 1.2695222448676184 38.819980390717774 2.649134989771934 8 58.70364201956788 4.947297701649099 33.407667944469225 2.9413923343137975 9 54.89883906274405 2.4737429452690254 33.71705047790569 8.910367514081234 10 31.61215775498183 16.997032261221236 39.485416302050695 11.905393681746244 11 23.672844907890948 16.660174149997836 45.95911408198637 13.707866860124845 12 19.334714639778237 15.058874893908513 49.72195091657398 15.884459549739264 13 17.61391543920464 15.545719549626352 53.15489262882941 13.685472382339603 14 15.959546916430961 16.26102551653145 51.089519572585395 16.68990799445219 15 14.225762682519699 15.259484249530939 54.56009906263114 15.954654005318217 16 16.85626697228542 15.231632293966099 48.57663333841443 19.335467395334042 17 16.93380079453349 15.922661894196445 50.00291692777875 17.140620383491317 18 17.430054894698905 14.987927682773753 49.67076353877914 17.911253883748195 19 17.331443916888258 17.419516316917615 47.26138119353157 17.98765857266255 20 18.485794561717487 18.22948129496538 49.515695894283006 13.769028249034122 21 18.759797584031045 18.511200061725955 47.77212583814626 14.956876516096736 22 17.35797855023044 15.218082693961582 49.474106149824706 17.949832605983275 23 17.238102227968255 18.437053639479018 48.6607537717758 15.66409036077692 24 17.222858927963173 16.949796850094376 48.13589496048974 17.691449261452703 25 16.770264650034534 19.24777137308259 46.01444161533815 17.96752236154473 26 16.603152916645495 17.123118816818817 47.57509207141392 18.698636195121768 27 16.751822138917273 17.210250272403414 47.26025206019786 18.777675528481446 28 14.97117887165706 18.367423750566918 48.35043029389459 18.310967083881433 29 17.337842339112612 17.964699528210456 46.11324078203774 18.584217350639186 30 17.35703760578568 17.570255616967863 47.646227471437626 17.426479305808826 31 19.850164006616723 17.54089815029141 45.05844205946393 17.55049578362794 32 19.282774506427593 19.0917627841417 44.015875614671955 17.60958709475875 33 18.650459839550155 18.303063150545466 43.379044414459685 19.6674325954447 34 19.753999484362446 21.78117019614928 41.644883802770515 16.81994651671776 35 17.151158961272607 24.057502996908056 39.17471644639157 19.616621595427763 36 20.717902973572635 24.003680974667894 37.507174701391286 17.771241350368193 37 18.90451483963484 23.243586052192306 37.889009957074116 19.962889151098743 38 21.361697162676123 22.071545651801628 38.80831267960277 17.75844450591948 39 21.708717473902905 21.99965749622211 36.722803412240935 19.568821617634054 40 20.86977140695659 23.117499496594725 38.85385439072906 17.158874705719626 41 20.670479373556827 24.299325719210888 36.633225501099965 18.396969406132325 42 18.855585728507418 23.9056345635241 38.50796321283599 18.730816495132494 43 20.148255206716083 22.7134579520156 37.272691345757565 19.865595495510753 44 20.95351546254006 21.781546573927184 36.78133015670489 20.48360780682787 45 19.680041251004457 21.917230762861298 36.21826900096165 22.184458985172597 46 20.79148482915272 22.636488696434384 36.1958745231764 20.376151951236494 47 17.651553216994962 21.923817373974604 40.54905990240524 19.87556950662519 48 19.56505783985502 23.260711241086902 36.34924846767198 20.824982451386106 49 18.803081028489917 22.27083768520139 38.551058468405905 20.375022817902785 50 18.91768806186145 21.94621185175985 37.89653751263218 21.23956257374652 51 18.645755117326363 21.359815273786605 37.10708512348014 22.887344485406892 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 119.0 1 615.5 2 1112.0 3 25887.5 4 50663.0 5 33464.0 6 16265.0 7 15343.5 8 14422.0 9 13992.5 10 13563.0 11 12714.0 12 11865.0 13 11105.5 14 10346.0 15 9361.0 16 8376.0 17 7637.5 18 6899.0 19 6546.0 20 6193.0 21 5818.5 22 5444.0 23 5209.0 24 4974.0 25 5021.0 26 5364.0 27 5660.0 28 6195.5 29 6731.0 30 7207.0 31 7683.0 32 8088.5 33 8494.0 34 9474.5 35 10455.0 36 11014.5 37 11574.0 38 12071.5 39 12569.0 40 13457.0 41 14345.0 42 15383.5 43 16422.0 44 17781.5 45 19141.0 46 30715.0 47 42289.0 48 36814.5 49 31340.0 50 30216.5 51 29093.0 52 26732.0 53 24371.0 54 23985.0 55 23599.0 56 22534.0 57 21469.0 58 20792.5 59 20116.0 60 18399.0 61 16682.0 62 15137.5 63 13593.0 64 12442.0 65 11291.0 66 10005.5 67 8720.0 68 7834.0 69 6948.0 70 5841.5 71 4735.0 72 4118.5 73 3502.0 74 2908.5 75 1880.0 76 1445.0 77 1113.5 78 782.0 79 569.5 80 357.0 81 266.0 82 175.0 83 131.5 84 88.0 85 60.5 86 33.0 87 31.0 88 29.0 89 21.5 90 14.0 91 11.5 92 9.0 93 5.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 531381.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.65577586588833 #Duplication Level Percentage of deduplicated Percentage of total 1 78.09830703258062 36.43737108417411 2 7.56695896688746 7.0608468309095045 3 3.889263865774802 5.443698696146627 4 2.5633533808701365 4.783809632117767 5 1.888003016393754 4.404312278349403 6 1.4186641185984432 3.971332508778419 7 1.0926188701973432 3.5683886780337155 8 0.8026361393314368 2.9958089454807544 9 0.6042194881135283 2.5371296110103896 >10 1.9833701697536936 13.13595882726008 >50 0.053093505533812334 1.6804081930687893 >100 0.03498409278152632 3.0470480174210284 >500 0.0016463102485424147 0.5052169986031463 >1k 0.0020578878106780186 2.556424896390607 >5k 4.115775621356037E-4 1.0286763441721987 >10k+ 4.115775621356037E-4 6.843568458083439 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 35639 6.706863813346732 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCG 5357 1.0081278781138203 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGC 4750 0.893897222520188 No Hit GAATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTC 4660 0.8769602225145423 No Hit GAACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCT 1717 0.323120322329929 No Hit GCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGC 1114 0.209642422292103 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCTGAAT 1072 0.20173848895613505 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTC 853 0.1605251222757306 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTA 723 0.1360605667120202 No Hit GAATGCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTT 536 0.10086924447806753 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8818888895161853E-4 0.0 0.0 0.05702123335234041 0.0 2 1.8818888895161853E-4 0.0 0.0 0.3586880223417849 0.0 3 1.8818888895161853E-4 0.0 0.0 0.4661438779331591 0.0 4 1.8818888895161853E-4 0.0 0.0 1.0164081892276917 0.0 5 1.8818888895161853E-4 0.0 0.0 2.2004926785112753 0.0 6 1.8818888895161853E-4 0.0 0.0 2.544501967514834 0.0 7 1.8818888895161853E-4 0.0 0.0 2.8949096787427475 0.0 8 1.8818888895161853E-4 0.0 0.0 3.341293723335987 0.0 9 1.8818888895161853E-4 0.0 0.0 3.587821167862607 0.0 10 1.8818888895161853E-4 0.0 0.0 5.154870046162735 0.0 11 1.8818888895161853E-4 0.0 0.0 5.606335190757667 0.0 12 1.8818888895161853E-4 0.0 0.0 6.969010935656337 0.0 13 1.8818888895161853E-4 0.0 0.0 7.148354946827229 0.0 14 1.8818888895161853E-4 0.0 0.0 7.266725757977797 0.0 15 1.8818888895161853E-4 0.0 0.0 7.536588624734418 0.0 16 1.8818888895161853E-4 0.0 0.0 7.694102724786923 0.0 17 1.8818888895161853E-4 0.0 0.0 7.829410535943137 0.0 18 1.8818888895161853E-4 0.0 0.0 7.973375035991125 0.0 19 1.8818888895161853E-4 0.0 0.0 8.327734713887022 0.0 20 1.8818888895161853E-4 0.0 0.0 8.48317873616106 0.0 21 1.8818888895161853E-4 0.0 0.0 8.648784958438483 0.0 22 1.8818888895161853E-4 0.0 0.0 8.887596658518088 0.0 23 1.8818888895161853E-4 0.0 0.0 9.064494214132608 0.0 24 1.8818888895161853E-4 0.0 0.0 9.21335162529334 0.0 25 1.8818888895161853E-4 0.0 0.0 9.338497236446166 0.0 26 1.8818888895161853E-4 0.0 0.0 9.461760958709476 0.0 27 1.8818888895161853E-4 0.0 0.0 9.602714436534239 0.0 28 1.8818888895161853E-4 0.0 0.0 9.718638792128434 0.0 29 1.8818888895161853E-4 0.0 0.0 9.869378092178682 0.0 30 1.8818888895161853E-4 0.0 0.0 10.072245714468526 0.0 31 1.8818888895161853E-4 0.0 0.0 10.211693681181675 0.0 32 1.8818888895161853E-4 0.0 0.0 10.352270781228535 0.0 33 1.8818888895161853E-4 0.0 0.0 10.490965992385878 0.0 34 1.8818888895161853E-4 0.0 0.0 10.65055017021685 0.0 35 1.8818888895161853E-4 0.0 0.0 10.86094534806476 0.0 36 1.8818888895161853E-4 0.0 0.0 11.031256292565974 0.0 37 1.8818888895161853E-4 0.0 0.0 11.191969603730657 0.0 38 1.8818888895161853E-4 0.0 0.0 11.403117537134372 0.0 39 1.8818888895161853E-4 0.0 0.0 11.82955355949874 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGTAA 30 2.1632895E-6 45.000004 33 GTATCGG 20 7.029857E-4 45.000004 2 CGTTTTT 14775 0.0 44.36041 1 GATACCT 640 0.0 41.48438 5 TACGGCT 555 0.0 41.351353 7 AGGCACG 55 6.002665E-11 40.90909 10 TGATACC 645 0.0 40.813953 4 CCGATGA 105 0.0 40.714287 18 GAATGAT 2200 0.0 40.397728 1 ACGGCTG 570 0.0 40.263157 8 GTTTTTT 16590 0.0 39.995476 2 CGACCAC 570 0.0 39.86842 12 AATGATA 2095 0.0 39.63007 2 TTACACG 290 0.0 39.56897 34 ATGATAC 2115 0.0 39.468086 3 TGATACG 1460 0.0 39.452057 4 CATACGA 80 0.0 39.375004 18 ACATACG 80 0.0 39.375004 17 CACCCGT 40 3.4535333E-7 39.375004 16 ATACCTG 675 0.0 39.333332 6 >>END_MODULE