SRR2933348.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933348.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	544299
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15289	2.8089340601397392	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCG	15039	2.7630034227510984	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTC	13213	2.4275260472644633	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC	12270	2.2542756830345083	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT	3215	0.5906679968179255	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTAGGGTT	3132	0.5754190252048966	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTC	2936	0.5394094054922018	No Hit
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	2557	0.4697785592110219	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTA	2421	0.4447922924716011	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCT	2370	0.4354224424443183	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGT	1010	0.18555977505011031	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTT	986	0.18115043386080076	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	634	0.11648009641759402	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTAT	608	0.11170331012917534	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATG	581	0.10674280129120209	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCTTA	20	7.0300105E-4	45.0	32
TAACACG	25	3.88809E-5	45.0	33
AACACGC	20	7.0300105E-4	45.0	34
ATGCGTT	30	2.1633878E-6	44.999996	12
CGTTTTT	11145	0.0	44.131897	1
TGATACC	1955	0.0	43.15857	4
GATACCT	1955	0.0	43.04348	5
CCGATGA	450	0.0	43.0	18
CGTTCAT	75	0.0	42.0	17
TACGGCT	1395	0.0	41.774197	7
ATACCTG	2045	0.0	41.149143	6
ACGGCTG	1415	0.0	41.024734	8
CACCGGT	110	0.0	40.909092	16
TACCTGT	2090	0.0	40.47847	7
GAATGAT	6100	0.0	40.09426	1
AATGATA	5750	0.0	39.95217	2
ATGATAC	5845	0.0	39.91873	3
CGGCTGT	1485	0.0	39.696968	9
TCGTTCA	80	0.0	39.375	16
GAATCTG	1635	0.0	38.944954	1