SRR2933347.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933347.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	403469
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25267	6.2624389977916515	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCG	7098	1.7592429653827184	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC	5010	1.2417310871467202	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTC	3916	0.9705826222088934	No Hit
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	1465	0.36310100652094707	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTAGGGTT	1429	0.35417838793067125	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT	1282	0.31774436202037826	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTC	971	0.24066285142105093	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTA	853	0.21141649048625794	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCT	657	0.16283778927253395	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTGTAGGGTTCGTATGCCG	627	0.15540227378063742	No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	496	0.12293385613268924	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACACT	20	7.027838E-4	45.0	18
TTGCACG	25	3.8862905E-5	45.0	1
TGCACGG	25	3.8862905E-5	45.0	2
CGTTTTT	9750	0.0	44.307693	1
ACCGGTG	100	0.0	42.75	17
ACGGCTG	760	0.0	42.33553	8
CCGATGA	145	0.0	41.896553	18
TACGGCT	770	0.0	41.785717	7
ATCCGGC	65	0.0	41.53846	6
CAAGACG	65	0.0	41.53846	38
GGCCGAT	125	0.0	41.399998	8
GATACCT	905	0.0	41.270714	5
TGATACC	915	0.0	40.81967	4
GCGACCA	635	0.0	40.748035	11
ATGATAC	2695	0.0	40.57514	3
TTTCGCG	100	0.0	40.5	1
GAATGAT	2900	0.0	40.422417	1
CGACCAC	630	0.0	40.357143	12
AATGATA	2710	0.0	40.1845	2
CGGCTGT	795	0.0	39.905663	9