SRR2933345.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933345.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	216887
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16619	7.662515503464938	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCG	5475	2.5243560010512387	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGC	4429	2.042077210713413	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTC	2653	1.2232176202354221	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTCTCCTT	1240	0.5717262906490477	No Hit
GCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	1172	0.5403735585811966	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT	811	0.37392743686804647	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTA	712	0.3282815475339693	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTC	611	0.2817135190214259	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCT	478	0.2203912636534232	No Hit
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT	432	0.19918206254870047	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCAGTCTCCTTCGTATGCCG	416	0.19180494912097085	No Hit
TCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	365	0.16829040007008259	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	338	0.1558415211607888	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	304	0.1401651551268633	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGT	290	0.13371018087759984	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTT	282	0.13002162416373503	No Hit
GAATCTTTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTC	279	0.12863841539603574	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	256	0.11803381484367435	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC	245	0.11296204936211021	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC	236	0.1088124230590123	No Hit
GAATGACTCTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCT	217	0.10005210086358335	No Hit
GAATGATACGGCTGCCTCCTATACACATCTGACGCAGTCTCCTTCGTATGC	217	0.10005210086358335	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	20	7.020617E-4	45.000004	21
ACACGAC	20	7.020617E-4	45.000004	26
GCTGGTA	20	7.020617E-4	45.000004	34
TTAGCGG	20	7.020617E-4	45.000004	2
GACACGA	20	7.020617E-4	45.000004	25
GGGTATG	20	7.020617E-4	45.000004	7
GGACTGC	20	7.020617E-4	45.000004	8
CTAAGTC	20	7.020617E-4	45.000004	45
AAGCGGC	20	7.020617E-4	45.000004	22
TACGGGC	20	7.020617E-4	45.000004	4
AGCGGCT	20	7.020617E-4	45.000004	23
CGGGCGA	80	0.0	45.000004	6
TTGAAGG	30	2.1573323E-6	45.000004	34
CAGTGTT	20	7.020617E-4	45.000004	31
CGGGATT	40	6.7702786E-9	45.000004	6
TAGGGTC	20	7.020617E-4	45.000004	5
AAACACG	20	7.020617E-4	45.000004	40
CTATTAC	30	2.1573323E-6	45.000004	37
CCCGGGT	20	7.020617E-4	45.000004	4
TCAAGCG	20	7.020617E-4	45.000004	17

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content