FastQCFastQC Report
Sat 14 Jan 2017
SRR2933345.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933345.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences216887
Sequences flagged as poor quality0
Sequence length51
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT166197.662515503464938No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCG54752.5243560010512387No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGC44292.042077210713413No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTC26531.2232176202354221No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTCTCCTT12400.5717262906490477No Hit
GCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC11720.5403735585811966No Hit
GAACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT8110.37392743686804647No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTA7120.3282815475339693No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTC6110.2817135190214259No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCT4780.2203912636534232No Hit
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT4320.19918206254870047No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCAGTCTCCTTCGTATGCCG4160.19180494912097085No Hit
TCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC3650.16829040007008259No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA3380.1558415211607888No Hit
CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC3040.1401651551268633No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGT2900.13371018087759984No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTT2820.13002162416373503No Hit
GAATCTTTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTC2790.12863841539603574No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA2560.11803381484367435No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC2450.11296204936211021No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC2360.1088124230590123No Hit
GAATGACTCTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCT2170.10005210086358335No Hit
GAATGATACGGCTGCCTCCTATACACATCTGACGCAGTCTCCTTCGTATGC2170.10005210086358335No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGAGAC207.020617E-445.00000421
ACACGAC207.020617E-445.00000426
GCTGGTA207.020617E-445.00000434
TTAGCGG207.020617E-445.0000042
GACACGA207.020617E-445.00000425
GGGTATG207.020617E-445.0000047
GGACTGC207.020617E-445.0000048
CTAAGTC207.020617E-445.00000445
AAGCGGC207.020617E-445.00000422
TACGGGC207.020617E-445.0000044
AGCGGCT207.020617E-445.00000423
CGGGCGA800.045.0000046
TTGAAGG302.1573323E-645.00000434
CAGTGTT207.020617E-445.00000431
CGGGATT406.7702786E-945.0000046
TAGGGTC207.020617E-445.0000045
AAACACG207.020617E-445.00000440
CTATTAC302.1573323E-645.00000437
CCCGGGT207.020617E-445.0000044
TCAAGCG207.020617E-445.00000417