SRR2933344.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933344.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	477910
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13238	2.7699776108472305	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC	12378	2.590027411018811	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCG	10860	2.27239438387981	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGC	8130	1.7011571216337804	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCT	2704	0.565796907367496	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	2112	0.4419242116716537	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTC	2059	0.4308342574961813	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTGCTGAT	1845	0.38605595195748155	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCT	1825	0.3818710635893788	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTGCTGATCGTA	1389	0.29064049716473817	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTT	1134	0.23728317047142766	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGT	640	0.133916427779289	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAACCTA	20	7.0291443E-4	45.000004	23
GCGATTA	25	3.887373E-5	45.0	9
ATACCGC	25	3.887373E-5	45.0	28
CGTTTTT	9820	0.0	44.106415	1
TACGGCT	960	0.0	42.89062	7
ACGGCTG	970	0.0	42.680412	8
TGATACC	1370	0.0	42.043793	4
GATACCT	1360	0.0	42.022057	5
ACCGGTG	70	0.0	41.785717	17
GAATCTG	1610	0.0	41.226707	1
ATACCTG	1395	0.0	40.96774	6
CGATGAA	310	0.0	40.64516	19
CGGCTGT	1055	0.0	40.308056	9
ATGATAC	3925	0.0	40.24204	3
GAATGAT	4095	0.0	40.054943	1
AATCTGT	1635	0.0	40.04587	2
CACGACC	180	0.0	40.000004	27
CCGATGA	315	0.0	40.0	18
AATGATA	3915	0.0	39.88506	2
CGACCAA	170	0.0	39.705883	29