SRR2933342.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933342.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	656361
Sequences flagged as poor quality	0
Sequence length	51
%GC	32

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25400	3.8698216377877417	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTC	14194	2.1625294616834334	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCG	12323	1.877472915057415	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGC	10436	1.5899786855099556	No Hit
GAACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCT	3481	0.5303483905960287	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCAAAGAGT	2401	0.36580479339875466	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTC	2377	0.362148269016593	No Hit
GCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	2156	0.32847777366418784	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCT	1955	0.29785438196358405	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTT	1542	0.23493169155388577	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTA	1476	0.22487624950294122	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGT	881	0.13422491586185042	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	772	0.11761820095953293	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	730	0.11121928329075007	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACCGG	30	2.1640735E-6	45.000004	28
ACCGGTG	35	1.2108649E-7	45.0	17
AGCGGAC	20	7.031073E-4	45.0	37
ACGTGTT	20	7.031073E-4	45.0	41
CGGTGAA	35	1.2108649E-7	45.0	19
CGTTTTT	24245	0.0	44.54527	1
CCGATGA	400	0.0	43.3125	18
CGGCTGT	1255	0.0	41.95219	9
CGATGAA	430	0.0	41.860466	19
ACACGAC	70	0.0	41.785713	26
AGACACG	70	0.0	41.785713	24
ACGGCTG	1265	0.0	41.620552	8
ATACCTG	1415	0.0	41.342754	6
GATACCT	1405	0.0	41.156586	5
TACGGCT	1285	0.0	41.14786	7
CGCTTTT	740	0.0	41.047295	1
CACCGAG	55	6.002665E-11	40.909092	16
TGATACC	1425	0.0	40.894737	4
TACCTGT	1450	0.0	40.655174	7
GATACCG	50	1.0804797E-9	40.5	27