SRR2933340.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933340.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	843000
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23286	2.7622775800711743	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	18779	2.2276393831553976	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCG	16908	2.005693950177936	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGC	15360	1.8220640569395017	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	4927	0.5844602609727164	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTC	3682	0.436773428232503	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCGAGAAT	3400	0.4033214709371293	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTA	3066	0.3637010676156584	No Hit
GCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	3001	0.3559905100830368	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT	2810	0.33333333333333337	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTT	1449	0.17188612099644127	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGT	1337	0.15860023724792408	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGAACG	20	7.032216E-4	45.0	17
GCGATCG	35	1.2114106E-7	45.0	9
CGTTTTT	20895	0.0	44.321606	1
TGATACC	1935	0.0	42.09302	4
GATACCT	1965	0.0	41.67939	5
CGGCTGT	2090	0.0	41.44737	9
TACGGCT	2055	0.0	41.16788	7
ACGGCTG	2055	0.0	41.16788	8
GAATCTG	2290	0.0	40.97162	1
CGATGAA	575	0.0	40.695652	19
CGCTTTT	655	0.0	40.53435	1
ATGATAC	6685	0.0	40.186985	3
ATACCTG	2040	0.0	40.14706	6
GCGAGAC	460	0.0	40.1087	21
ACCGGTG	90	0.0	40.0	17
CGACCAC	1530	0.0	39.852943	12
GAATGAT	7080	0.0	39.819916	1
CGAGACA	465	0.0	39.67742	22
GCGACCT	210	0.0	39.642857	11
AATGATA	6690	0.0	39.5852	2