SRR2933339.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933339.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	555288
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32885	5.922152108455432	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCG	7731	1.392250507844578	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGC	6361	1.14553168806097	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	5767	1.0385601705781504	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	2086	0.37566091829825243	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCGAGAAT	1718	0.3093890017432396	No Hit
GCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	1517	0.27319156905965913	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTC	1256	0.2261889325899353	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTA	1122	0.2020573108008817	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT	704	0.126781057757416	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTCCGAGAATCGTATGCCG	589	0.10607108383397446	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTT	566	0.10192908904928613	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGGCG	30	2.163466E-6	45.000004	5
TCGTTAG	25	3.888192E-5	45.0	1
CGTTTTT	15525	0.0	44.420288	1
TACGGCT	885	0.0	42.20339	7
GAATGAT	3250	0.0	41.26154	1
CGACCGC	60	3.6379788E-12	41.250004	12
AATGATA	2990	0.0	41.16221	2
ATGATAC	3015	0.0	40.97015	3
TGATACC	1080	0.0	40.833336	4
ACGGCTG	910	0.0	40.796703	8
CGACCAC	575	0.0	40.695652	12
GATACCT	1090	0.0	40.66514	5
ACCACCG	300	0.0	40.500004	14
ATACGGC	1980	0.0	40.227272	6
CGCATGG	45	1.9252184E-8	40.000004	2
GTTTTTT	17385	0.0	39.991375	2
CGGCTGT	920	0.0	39.86413	9
TGATACG	2080	0.0	38.72596	4
GATACGG	2070	0.0	38.695652	5
CTTGTCG	35	6.242457E-6	38.571426	1