SRR2933336.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933336.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	644218
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC	22931	3.5595093586332576	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCG	17051	2.6467748495074646	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16829	2.6123144649792462	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC	15155	2.352464538401597	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCT	5813	0.9023343029843934	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTC	4121	0.6396902911747265	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCACAGAT	3258	0.5057294269952096	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	3066	0.4759258511870206	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCACAGATCGTA	3045	0.47266608508299984	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCT	2763	0.42889208311472204	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTT	2395	0.3717685628156928	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTCACAGATCGT	1479	0.22958066989745707	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATG	840	0.13039064416082755	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTAT	672	0.10431251532866204	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTG	105	0.0	45.000004	17
TTCGTAG	20	7.0309744E-4	45.000004	1
TCGGCGA	20	7.0309744E-4	45.000004	30
GGACGTT	20	7.0309744E-4	45.000004	8
GCGATCG	35	1.2108103E-7	45.000004	9
CGGTGAA	85	0.0	45.0	19
ACCGGTC	65	0.0	44.999996	17
CGTTTTT	17505	0.0	44.408745	1
ACGGCTG	1940	0.0	42.680412	8
CCGGTGA	95	0.0	42.63158	18
CCGATGA	665	0.0	42.293236	18
TGATACC	1900	0.0	42.276318	4
TACGGCT	1970	0.0	42.144672	7
CGGCTGT	1955	0.0	42.122765	9
GATACCT	1905	0.0	42.047245	5
TGTTGCG	65	0.0	41.53846	1
CACCGGT	195	0.0	41.53846	16
CGATGAA	690	0.0	41.413044	19
CGCTTTT	525	0.0	41.142853	1
AATGATC	510	0.0	41.02941	2