##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933336.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 644218 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.287682120027693 31.0 28.0 31.0 25.0 34.0 2 28.30958619597714 31.0 26.0 33.0 16.0 34.0 3 28.295618874356197 31.0 25.0 33.0 16.0 34.0 4 33.000288722140645 35.0 32.0 37.0 28.0 37.0 5 34.16723686702328 35.0 33.0 37.0 30.0 37.0 6 33.51828884011313 35.0 33.0 37.0 28.0 37.0 7 33.60606968448569 35.0 33.0 37.0 29.0 37.0 8 33.46802945586742 35.0 33.0 37.0 28.0 37.0 9 34.7039852969026 37.0 34.0 39.0 28.0 39.0 10 34.54164894492237 37.0 32.0 39.0 27.0 39.0 11 35.03106401870174 37.0 34.0 39.0 28.0 39.0 12 35.14947890310423 37.0 34.0 39.0 30.0 39.0 13 35.38282848352576 37.0 34.0 39.0 30.0 39.0 14 36.14616325529557 38.0 34.0 40.0 30.0 41.0 15 36.417225225001474 38.0 34.0 40.0 30.0 41.0 16 36.374918117780005 38.0 34.0 40.0 30.0 41.0 17 35.59717517983043 38.0 33.0 40.0 27.0 41.0 18 35.38690008661664 37.0 34.0 39.0 27.0 40.0 19 34.7568012691356 37.0 33.0 38.0 27.0 40.0 20 33.80653288172637 35.0 32.0 38.0 27.0 40.0 21 34.237782862323 35.0 33.0 38.0 27.0 40.0 22 34.752357121347124 35.0 33.0 39.0 29.0 40.0 23 35.0010307069967 35.0 33.0 39.0 29.0 40.0 24 34.490139983670126 35.0 33.0 39.0 27.0 40.0 25 33.48805528563312 35.0 32.0 38.0 24.0 40.0 26 33.51125240213717 35.0 32.0 38.0 24.0 40.0 27 34.27742472268704 35.0 33.0 38.0 26.0 40.0 28 33.90711995007901 35.0 33.0 39.0 24.0 40.0 29 33.93171255692948 35.0 33.0 39.0 24.0 40.0 30 33.16504351011614 35.0 32.0 39.0 21.0 40.0 31 33.165714090571825 35.0 33.0 39.0 21.0 40.0 32 32.37649832820567 35.0 31.0 39.0 16.0 40.0 33 31.56085672862292 35.0 30.0 39.0 10.0 40.0 34 30.839970320605758 35.0 25.0 39.0 8.0 40.0 35 30.33380160132129 35.0 23.0 40.0 7.0 41.0 36 29.91603463423872 35.0 21.0 40.0 7.0 40.0 37 29.734776116159438 36.0 20.0 40.0 7.0 40.0 38 29.58274838641578 35.0 20.0 40.0 7.0 40.0 39 29.148980624571184 35.0 18.0 39.0 7.0 40.0 40 29.03029098845422 35.0 18.0 39.0 7.0 40.0 41 28.5376875529712 35.0 18.0 39.0 7.0 40.0 42 28.803599092232755 35.0 18.0 39.0 7.0 40.0 43 28.837519286949448 35.0 18.0 39.0 7.0 40.0 44 28.93862326107001 35.0 18.0 39.0 7.0 40.0 45 29.023648826949884 35.0 18.0 39.0 7.0 40.0 46 28.768084716664234 35.0 18.0 39.0 7.0 40.0 47 28.625609653874932 35.0 18.0 39.0 7.0 40.0 48 28.488829868150223 35.0 18.0 39.0 7.0 40.0 49 28.659627641574748 35.0 18.0 39.0 7.0 40.0 50 28.62184540015957 35.0 17.0 39.0 7.0 40.0 51 27.562629420475677 34.0 15.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 9.0 9 26.0 10 24.0 11 29.0 12 63.0 13 67.0 14 114.0 15 219.0 16 313.0 17 739.0 18 1483.0 19 3027.0 20 4714.0 21 7051.0 22 10338.0 23 14963.0 24 21440.0 25 30566.0 26 36599.0 27 34443.0 28 28403.0 29 24677.0 30 25126.0 31 28302.0 32 34126.0 33 40909.0 34 48044.0 35 57702.0 36 64630.0 37 67086.0 38 51441.0 39 7544.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.679887864046023 2.3327507148201385 30.929436929734965 38.05792449139888 2 38.47936568056155 19.07149443200904 30.1104595028391 12.33868038459031 3 10.109621277269495 19.22315116932467 57.76817785283863 12.8990497005672 4 9.190367235935662 2.5098646731385963 73.71386704500651 14.58590104591924 5 21.06243538677901 3.015594100133806 59.859550649003914 16.062419864083278 6 11.962565466969256 15.132455162693374 63.49993325240835 9.405046117929023 7 49.92921650745555 0.9090090621497692 46.93535418134855 2.2264202490461305 8 48.427085241331355 11.148089621836087 37.123302981288944 3.30152215554362 9 45.7093716723221 2.1609144730510477 35.48317495009453 16.646538904532314 10 27.99223244305499 13.46919831485615 44.995948576413575 13.542620665675283 11 21.491793150765734 16.315439804538215 47.42742363609834 14.765343408597712 12 14.369669894352533 13.904299476264246 52.46981611814634 19.25621451123688 13 15.34045928552136 15.566159281485458 58.33491147406623 10.758469958926947 14 14.39761074667271 22.45854664104387 48.64843888249009 14.49540372979333 15 11.312319742695795 16.446917037400382 58.027872552458945 14.212890667444873 16 12.049958243948478 18.531770301357614 48.19548662098855 21.22278483370536 17 12.82826620802275 19.38707083626971 52.21772753943541 15.566935416272132 18 13.043100316973447 18.274714460011985 50.80190246158909 17.88028276142548 19 13.177216408110299 20.31377577155559 47.4892039651174 19.019803855216715 20 15.420711622463203 19.195831224833828 53.37587586810676 12.007581284596208 21 15.174676895088309 22.842112452616973 49.58880379002139 12.39440686227333 22 13.653142259297319 14.840007575075518 52.11745092499744 19.389399240629725 23 14.545076356140314 21.731463572889922 50.696348130601756 13.02711194036801 24 16.336395443778347 18.096358686034854 47.929738070032194 17.637507800154605 25 12.31136044009947 26.881738790285276 46.17396595562372 14.632934813991538 26 13.32499247149257 17.243386555482772 50.634102120710686 18.797518852313967 27 17.554771831895412 19.22020185713532 46.525244560071286 16.699781750897987 28 12.200062711690764 19.06683762328901 50.71699331592722 18.016106349093008 29 15.703535138726332 16.138325846219757 47.66274770341717 20.495391311636745 30 12.84549640028686 20.691442958749988 51.208441862847664 15.254618778115484 31 14.90147745017991 17.83355944726785 44.4740755458556 22.790887556696646 32 16.29215576093807 24.565442132942575 42.93717344128851 16.205228664830848 33 13.932706009456428 19.768929151312133 40.370340474808216 25.928024364423223 34 17.668397964664134 24.42014970087765 37.86730578779233 20.044146546665882 35 18.38383901101801 22.862757637942437 39.40467357323142 19.34872977780813 36 16.02190562821902 25.17641543701045 34.298948492591016 24.50273044217951 37 15.779751574777482 26.429096982698404 41.25948048641919 16.53167095610492 38 18.195238257856815 22.93943975486559 33.56301748786901 25.302304499408585 39 19.74160920682129 28.639994536011105 33.86369210422559 17.754704152942015 40 20.052839256276602 22.708462042352124 36.99865573454949 20.24004296682179 41 17.229105675408015 31.171901437091172 33.46149905777237 18.137493829728445 42 20.022414772639074 23.709210236286474 38.837474271131825 17.430900719942628 43 20.111980727020978 24.967014271566455 33.41446528970007 21.506539711712495 44 19.508768770819813 23.58968547913905 34.676615679785414 22.224930070255724 45 17.493922864620362 22.456683917555857 34.75267688887923 25.29671632894455 46 23.519678121381272 25.948359095834018 31.945707819402745 18.58625496338196 47 16.313577081050205 22.29183288886681 41.31474128323021 20.079848746852775 48 19.223306396282002 25.125035314132795 32.09984818803573 23.551810101549474 49 18.044978563157194 22.01506322393972 39.071866976706644 20.86809123619644 50 18.92666768081612 21.857042181373387 36.40941420450841 22.80687593330208 51 18.433666864322326 21.899729594640323 33.47888447699381 26.187719064043534 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 39.0 1 712.5 2 1386.0 3 17127.5 4 32869.0 5 25459.0 6 18049.0 7 17571.5 8 17094.0 9 17088.5 10 17083.0 11 16944.5 12 16806.0 13 16317.5 14 15829.0 15 15347.0 16 14865.0 17 14241.5 18 13618.0 19 13002.5 20 12387.0 21 11682.5 22 10978.0 23 10391.0 24 9804.0 25 9565.0 26 9149.0 27 8972.0 28 9005.0 29 9038.0 30 9761.0 31 10484.0 32 11339.5 33 12195.0 34 13284.0 35 14373.0 36 15537.5 37 16702.0 38 17730.5 39 18759.0 40 20488.0 41 22217.0 42 23227.0 43 24237.0 44 26405.0 45 28573.0 46 68625.0 47 108677.0 48 75738.0 49 42799.0 50 38627.5 51 34456.0 52 29971.0 53 25486.0 54 23619.0 55 21752.0 56 19320.0 57 16888.0 58 15278.5 59 13669.0 60 11323.5 61 8978.0 62 7573.0 63 6168.0 64 4990.5 65 3813.0 66 3046.0 67 2279.0 68 1832.0 69 1385.0 70 1128.0 71 871.0 72 709.0 73 547.0 74 452.0 75 280.5 76 204.0 77 153.0 78 102.0 79 82.5 80 63.0 81 46.5 82 30.0 83 17.5 84 5.0 85 4.0 86 3.0 87 2.5 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 644218.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.17475628670979 #Duplication Level Percentage of deduplicated Percentage of total 1 82.77219869305023 42.35847095431964 2 6.6658979760107675 6.822514087088462 3 3.2947853656207124 5.0582951430797385 4 2.0769173792736675 4.251429628478478 5 1.4468264768723809 3.7020496171551525 6 1.0030615497474624 3.0798858209337494 7 0.7137894920535675 2.5569602307098984 8 0.4888483209204313 2.001335494741629 9 0.3487661041653767 1.6063218343555552 >10 1.115861818987033 8.526867099409795 >50 0.04130073749633176 1.4227065115818192 >100 0.027122869423111175 2.8531414477415677 >500 9.246432757878622E-4 0.3175064256898511 >1k 0.002157500976838345 3.1745910729556055 >5k 3.0821442526262076E-4 0.9168727533706431 >10k+ 0.001232857701050483 11.351051878388388 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC 22931 3.5595093586332576 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCG 17051 2.6467748495074646 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16829 2.6123144649792462 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC 15155 2.352464538401597 No Hit GAACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCT 5813 0.9023343029843934 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTC 4121 0.6396902911747265 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCACAGAT 3258 0.5057294269952096 No Hit GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC 3066 0.4759258511870206 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCACAGATCGTA 3045 0.47266608508299984 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCT 2763 0.42889208311472204 No Hit GAATGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTT 2395 0.3717685628156928 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTCACAGATCGT 1479 0.22958066989745707 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATG 840 0.13039064416082755 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTAT 672 0.10431251532866204 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.058675789872372396 0.0 2 0.0 0.0 0.0 0.5932774309317653 0.0 3 0.0 0.0 0.0 0.6988317619191019 0.0 4 0.0 0.0 0.0 1.7546855257071363 0.0 5 0.0 0.0 0.0 5.916630705754884 0.0 6 0.0 0.0 0.0 6.433226019763496 0.0 7 0.0 0.0 0.0 7.0201391454445545 0.0 8 0.0 0.0 0.0 7.842997246273777 0.0 9 0.0 0.0 0.0 7.967334039098566 0.0 10 0.0 0.0 0.0 11.126202620851947 0.0 11 0.0 0.0 0.0 11.282826620802275 0.0 12 0.0 0.0 0.0 14.202800915218141 0.0 13 0.0 0.0 0.0 14.45721789828909 0.0 14 0.0 0.0 0.0 14.61834348000211 0.0 15 0.0 0.0 0.0 15.236457224107367 0.0 16 0.0 0.0 0.0 15.5672458701868 0.0 17 0.0 0.0 0.0 15.721851919691781 0.0 18 0.0 0.0 0.0 15.814988094092373 0.0 19 0.0 0.0 0.0 16.537569580483623 0.0 20 1.5522695733431852E-4 0.0 0.0 16.675876799468504 0.0 21 1.5522695733431852E-4 0.0 0.0 16.774756371290465 0.0 22 1.5522695733431852E-4 0.0 0.0 17.01939405604935 0.0 23 1.5522695733431852E-4 0.0 0.0 17.13193360011673 0.0 24 1.5522695733431852E-4 0.0 0.0 17.241989512866763 0.0 25 1.5522695733431852E-4 0.0 0.0 17.328761382016648 0.0 26 1.5522695733431852E-4 0.0 0.0 17.479797211502937 0.0 27 1.5522695733431852E-4 0.0 0.0 17.681747482994886 0.0 28 1.5522695733431852E-4 0.0 0.0 17.776591153926155 0.0 29 1.5522695733431852E-4 0.0 0.0 17.877954357065466 0.0 30 1.5522695733431852E-4 0.0 0.0 17.98769981590083 0.0 31 1.5522695733431852E-4 0.0 0.0 18.099618452138873 0.0 32 1.5522695733431852E-4 0.0 0.0 18.230164323257036 0.0 33 1.5522695733431852E-4 0.0 0.0 18.343790456025754 0.0 34 1.5522695733431852E-4 0.0 0.0 18.51469533605084 0.0 35 1.5522695733431852E-4 0.0 0.0 18.65098460459037 0.0 36 1.5522695733431852E-4 0.0 0.0 18.771285496524467 0.0 37 1.5522695733431852E-4 0.0 0.0 18.912852481613367 0.0 38 1.5522695733431852E-4 0.0 0.0 19.05348810495826 0.0 39 1.5522695733431852E-4 0.0 0.0 19.21771822581797 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGTG 105 0.0 45.000004 17 TTCGTAG 20 7.0309744E-4 45.000004 1 TCGGCGA 20 7.0309744E-4 45.000004 30 GGACGTT 20 7.0309744E-4 45.000004 8 GCGATCG 35 1.2108103E-7 45.000004 9 CGGTGAA 85 0.0 45.0 19 ACCGGTC 65 0.0 44.999996 17 CGTTTTT 17505 0.0 44.408745 1 ACGGCTG 1940 0.0 42.680412 8 CCGGTGA 95 0.0 42.63158 18 CCGATGA 665 0.0 42.293236 18 TGATACC 1900 0.0 42.276318 4 TACGGCT 1970 0.0 42.144672 7 CGGCTGT 1955 0.0 42.122765 9 GATACCT 1905 0.0 42.047245 5 TGTTGCG 65 0.0 41.53846 1 CACCGGT 195 0.0 41.53846 16 CGATGAA 690 0.0 41.413044 19 CGCTTTT 525 0.0 41.142853 1 AATGATC 510 0.0 41.02941 2 >>END_MODULE