SRR2933335.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933335.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	357138
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16098	4.507501302017707	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCG	6504	1.821144767568839	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC	5596	1.5669013098578142	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC	4728	1.3238580044688608	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCT	1922	0.5381673190755394	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCACAGAT	1217	0.3407646343990278	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	1108	0.3102442193213828	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTC	1090	0.3052041507764505	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCACAGATCGTA	811	0.22708308833000126	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTT	636	0.17808242192093812	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCT	585	0.16380222771029687	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCTCACAGATCGTATGCCG	565	0.15820215154926107	No Hit
GAATCTTTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC	561	0.1570821363170539	No Hit
GAATCTGTCTCTTATCCACATCTGACGCCTCACAGATCGTATGCCGTCTTC	410	0.11480156130123369	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTCACAGATCGT	393	0.11004149656435326	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGGT	55	1.8189894E-12	45.0	4
TAGCGGG	35	1.2087912E-7	45.0	3
CTACGGC	45	3.8380676E-10	45.0	6
GGGCGCA	20	7.0267497E-4	45.0	7
CGAGGGA	20	7.0267497E-4	45.0	4
CGGTGAA	20	7.0267497E-4	45.0	19
ATACCGC	20	7.0267497E-4	45.0	28
CACCGGT	105	0.0	44.999996	16
CGTTTTT	10900	0.0	44.6078	1
GGCGACT	115	0.0	43.043476	10
ACCGGTG	100	0.0	42.750004	17
GATACCT	870	0.0	42.413795	5
CCGGTGT	75	0.0	42.0	18
ACGGCTG	730	0.0	41.917805	8
CGGCTGT	680	0.0	41.691177	9
TACGGCT	735	0.0	41.632652	7
CGGTGTC	65	0.0	41.538464	19
CCGATGA	185	0.0	41.351353	18
GAATGAT	2835	0.0	41.19048	1
CGATGAA	175	0.0	41.142857	19