##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933335.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 357138 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.468395970185195 31.0 27.0 31.0 16.0 33.0 2 28.604491821088768 31.0 28.0 33.0 16.0 34.0 3 28.760025536347296 31.0 30.0 33.0 16.0 34.0 4 32.0720057792786 35.0 30.0 37.0 19.0 37.0 5 33.66970470798403 35.0 33.0 37.0 28.0 37.0 6 32.66827388852489 35.0 33.0 37.0 17.0 37.0 7 32.219366183380096 35.0 32.0 35.0 25.0 37.0 8 32.99359911294793 35.0 32.0 36.0 27.0 37.0 9 33.00216442943624 35.0 31.0 37.0 25.0 39.0 10 31.733817179913647 35.0 28.0 39.0 15.0 39.0 11 32.672762349567954 35.0 30.0 39.0 17.0 39.0 12 33.421248928985435 35.0 31.0 39.0 25.0 39.0 13 33.76500960413062 35.0 32.0 39.0 26.0 39.0 14 33.73488679446041 36.0 32.0 40.0 21.0 41.0 15 34.38231439947583 37.0 32.0 40.0 25.0 41.0 16 34.559456008601714 37.0 32.0 40.0 25.0 41.0 17 32.57100056560769 36.0 29.0 39.0 18.0 41.0 18 33.18867496597954 36.0 30.0 39.0 23.0 39.0 19 33.02034507669304 36.0 31.0 37.0 23.0 39.0 20 32.42467617559599 34.0 30.0 36.0 24.0 39.0 21 32.7375748310177 35.0 31.0 37.0 24.0 39.0 22 33.04862546130627 35.0 31.0 37.0 25.0 39.0 23 33.96982678964434 35.0 33.0 38.0 27.0 40.0 24 32.22010539343335 35.0 31.0 37.0 21.0 39.0 25 31.28394346163108 34.0 28.0 37.0 18.0 39.0 26 30.63035857287659 33.0 25.0 37.0 19.0 39.0 27 32.40213586904782 34.0 30.0 37.0 22.0 39.0 28 32.364721760215936 35.0 31.0 37.0 21.0 39.0 29 32.53151162855815 35.0 31.0 38.0 21.0 40.0 30 31.42851782784246 35.0 29.0 38.0 18.0 40.0 31 31.76691643006345 35.0 30.0 37.0 20.0 40.0 32 31.474878058341595 35.0 30.0 37.0 16.0 40.0 33 31.06909373967486 35.0 29.0 38.0 13.0 40.0 34 29.888443682834087 35.0 24.0 38.0 8.0 40.0 35 29.182192877823137 35.0 22.0 38.0 7.0 40.0 36 28.652798078053863 34.0 20.0 38.0 7.0 40.0 37 28.71453331765312 35.0 20.0 38.0 7.0 40.0 38 28.717814962283487 35.0 20.0 38.0 7.0 40.0 39 28.200213922909352 34.0 18.0 38.0 7.0 40.0 40 28.112975936472736 33.0 18.0 38.0 7.0 40.0 41 27.57936147931612 33.0 18.0 38.0 7.0 40.0 42 28.060979229317518 33.0 18.0 38.0 7.0 40.0 43 28.242654100095763 34.0 18.0 38.0 7.0 40.0 44 28.20502998840784 34.0 18.0 38.0 7.0 40.0 45 28.445746462151885 35.0 18.0 38.0 7.0 40.0 46 28.141099518953457 34.0 18.0 38.0 7.0 40.0 47 28.19059859214085 34.0 18.0 38.0 7.0 40.0 48 27.88434442708421 34.0 18.0 38.0 7.0 40.0 49 27.67144913170819 34.0 17.0 38.0 7.0 40.0 50 27.843287468709576 34.0 17.0 38.0 7.0 40.0 51 26.332431721071405 31.0 15.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 1.0 9 12.0 10 17.0 11 17.0 12 26.0 13 30.0 14 79.0 15 141.0 16 390.0 17 831.0 18 1528.0 19 2424.0 20 3661.0 21 5197.0 22 7189.0 23 9931.0 24 13512.0 25 18407.0 26 21516.0 27 20333.0 28 18316.0 29 17930.0 30 20025.0 31 23061.0 32 26822.0 33 30448.0 34 34314.0 35 35305.0 36 27584.0 37 15021.0 38 3013.0 39 55.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.366597785729887 2.364072151381259 34.46062866454984 39.80870139833902 2 41.346762315967496 13.12181845673101 32.8427666616266 12.688652565674893 3 10.84482748965386 13.048177455213391 62.880735177998424 13.22625987713433 4 9.843533872060659 2.6345558299592873 72.26954286578298 15.252367432197078 5 18.093846076306637 3.0685617324395613 63.30298092054052 15.534611270713281 6 12.626491720287397 10.903348285536683 65.8672557946788 10.602904199497114 7 51.496620354036814 0.943052825518427 45.193734634791035 2.366592185653725 8 52.71827696856677 7.830866499784397 36.39713500103601 3.0537215306128163 9 49.15998857584463 2.163029417200074 35.77944660047377 12.897535406481527 10 27.136009049723075 14.976563681266065 44.66928750231003 13.218139766700826 11 20.235035196478673 17.350715969737188 48.677542014571394 13.73670681921274 12 14.79596122507266 14.977123688882168 52.84091863649346 17.385996449551712 13 14.819761548757063 16.44658367353796 57.26049874278291 11.473156034922075 14 14.260593944077641 19.681747671768335 50.89125212102885 15.166406263125179 15 11.750079801085295 17.04131176183996 56.9480144929971 14.260593944077641 16 12.540530551215495 16.835508962921896 50.51856705251191 20.10539343335069 17 13.224579854286016 18.182887287267107 52.90559951615342 15.686933342293456 18 13.376901925866191 16.900749850197965 51.929506241284884 17.792841982650963 19 13.820147954012175 19.786189092171654 48.7013423382558 17.692320615560373 20 15.542731381146785 18.595332896527392 53.376565921296525 12.485369801029295 21 15.811535036876501 21.01260577143849 49.90031864433357 13.275540547351444 22 14.177152809278207 15.730053928733431 52.281471028005974 17.81132223398238 23 14.486277013367383 21.056846373110673 50.47236642418337 13.984510189338575 24 15.003164043030987 17.963084297946452 50.00532007235299 17.02843158666958 25 12.902015467410358 22.738829248077774 48.41657846546713 15.94257681904474 26 13.650185642524736 18.138646685594924 51.21129647363204 16.999871198248297 27 15.333288532724046 19.22730149130028 48.732422760949554 16.706987215026125 28 12.371128247344163 19.174380771578495 51.67470277595775 16.77978820511959 29 15.218486971422813 16.522464705519997 49.65895536179292 18.600092961264274 30 13.000296804036534 19.9026706763212 51.31685790926757 15.7801746103747 31 14.397795810023018 18.284808673397958 47.080400293443994 20.236995223135036 32 15.345608700278323 22.540866555785158 45.96906517928644 16.14445956465008 33 13.798027653176085 20.03651249656995 43.60359300886492 22.56186684138904 34 16.533384854034015 23.260196338670205 40.305988161439 19.900430645856783 35 16.39170292715981 22.91355162430209 41.02139789101132 19.67334755752678 36 15.984017382636404 23.38423802563715 36.9112219926191 23.720522599107348 37 15.715213726906684 25.965593132066594 40.85087557190778 17.46831756911894 38 17.719480984941395 23.072313783467454 36.4030150810051 22.805190150586046 39 18.426490600272164 27.265930816659107 36.167811882241594 18.13976670082713 40 19.648427218610173 22.72566906909934 37.87471509612531 19.75118861616518 41 17.253274644535168 27.921699735116395 36.287933515895816 18.537092104452622 42 19.178860832507322 23.506879693563832 39.33241492084292 17.98184455308592 43 18.900537047303843 24.104687823754404 35.96900917852483 21.025765950416925 44 18.744574926218995 23.47187921755736 36.86754139856302 20.916004457660627 45 17.282675044380603 22.616187580151088 36.71913938029557 23.381997995172735 46 20.731761951962547 25.35126477720097 34.537349707956025 19.379623562880454 47 16.4997843970678 22.178821631974195 40.698833504135656 20.62256046682235 48 18.589452816558307 24.30293051985507 34.90919476504881 22.19842189853782 49 17.648640021504292 22.014459396647794 38.61504516461424 21.721855417233673 50 17.99584474348851 22.160621384450828 37.35250799410872 22.49102587795194 51 18.10532623243676 22.034619670827524 35.437281947034485 24.422772149701235 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 37.0 1 200.0 2 363.0 3 12254.0 4 24145.0 5 17281.5 6 10418.0 7 10111.5 8 9805.0 9 9900.5 10 9996.0 11 9788.5 12 9581.0 13 9286.5 14 8992.0 15 8637.5 16 8283.0 17 7857.5 18 7432.0 19 7061.0 20 6690.0 21 6232.0 22 5774.0 23 5452.0 24 5130.0 25 5000.0 26 4821.5 27 4773.0 28 4759.5 29 4746.0 30 5210.0 31 5674.0 32 6275.5 33 6877.0 34 7450.0 35 8023.0 36 8573.5 37 9124.0 38 9940.0 39 10756.0 40 11934.0 41 13112.0 42 13944.5 43 14777.0 44 15780.5 45 16784.0 46 29074.0 47 41364.0 48 33897.5 49 26431.0 50 24132.0 51 21833.0 52 18820.0 53 15807.0 54 14206.0 55 12605.0 56 11153.5 57 9702.0 58 8718.0 59 7734.0 60 6490.5 61 5247.0 62 4494.5 63 3742.0 64 3113.0 65 2484.0 66 1973.5 67 1463.0 68 1198.5 69 934.0 70 767.5 71 601.0 72 494.0 73 387.0 74 349.5 75 236.0 76 160.0 77 112.5 78 65.0 79 66.5 80 68.0 81 44.5 82 21.0 83 12.5 84 4.0 85 6.0 86 8.0 87 5.0 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 357138.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.94791402344277 #Duplication Level Percentage of deduplicated Percentage of total 1 82.50065518962246 46.15739563426695 2 7.821294209318326 8.75170191949985 3 3.4541697807165104 5.797607817417045 4 1.9993938633088355 4.474476638536072 5 1.2140920667005288 3.3962959282152565 6 0.8282851408306727 2.78044955076538 7 0.560812956959221 2.196342056943104 8 0.39891749092467593 1.7854881187761025 9 0.2847828153751141 1.433970402296477 >10 0.8644403721505531 7.1791163753324945 >50 0.039391753742439306 1.5341339455395275 >100 0.027113804524016474 2.6575435978235897 >500 0.0025579060871713656 0.9038796641816798 >1k 0.0025579060871713656 2.880794433181953 >5k 0.0010231624348685463 3.463250138251528 >10k+ 5.115812174342732E-4 4.607553778972983 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16098 4.507501302017707 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCG 6504 1.821144767568839 No Hit GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC 5596 1.5669013098578142 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC 4728 1.3238580044688608 No Hit GAACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCT 1922 0.5381673190755394 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCACAGAT 1217 0.3407646343990278 No Hit GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC 1108 0.3102442193213828 Illumina Single End Adapter 2 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTC 1090 0.3052041507764505 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCACAGATCGTA 811 0.22708308833000126 No Hit GAATGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTT 636 0.17808242192093812 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCT 585 0.16380222771029687 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCCTCACAGATCGTATGCCG 565 0.15820215154926107 No Hit GAATCTTTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC 561 0.1570821363170539 No Hit GAATCTGTCTCTTATCCACATCTGACGCCTCACAGATCGTATGCCGTCTTC 410 0.11480156130123369 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTCACAGATCGT 393 0.11004149656435326 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07784105863839748 0.0 2 0.0 0.0 0.0 0.496166747867771 0.0 3 0.0 0.0 0.0 0.6370086633178211 0.0 4 0.0 0.0 0.0 1.4532197637887876 0.0 5 0.0 0.0 0.0 3.463647105600636 0.0 6 0.0 0.0 0.0 3.9220133393814156 0.0 7 0.0 0.0 0.0 4.328578868672614 0.0 8 0.0 0.0 0.0 4.8849464352715195 0.0 9 0.0 0.0 0.0 5.064428876232717 0.0 10 0.0 0.0 0.0 7.4307410580783895 0.0 11 0.0 0.0 0.0 7.814066271301289 0.0 12 0.0 0.0 0.0 9.767092832462522 0.0 13 0.0 0.0 0.0 10.00173602360992 0.0 14 0.0 0.0 0.0 10.129697763889588 0.0 15 0.0 0.0 0.0 10.52898319417144 0.0 16 0.0 0.0 0.0 10.766146419591307 0.0 17 0.0 0.0 0.0 10.956549009066523 0.0 18 0.0 0.0 0.0 11.150591648046413 0.0 19 0.0 0.0 0.0 11.765480010528144 0.0 20 0.0 0.0 0.0 11.969602786597898 0.0 21 0.0 0.0 0.0 12.199205909200366 0.0 22 0.0 0.0 0.0 12.535490482670564 0.0 23 0.0 0.0 0.0 12.78189383375614 0.0 24 0.0 0.0 0.0 12.997216762147966 0.0 25 0.0 0.0 0.0 13.166339062211247 0.0 26 0.0 0.0 0.0 13.338541404163097 0.0 27 0.0 0.0 0.0 13.524743936517536 0.0 28 0.0 0.0 0.0 13.680986061410435 0.0 29 0.0 0.0 0.0 13.857948468099167 0.0 30 0.0 0.0 0.0 14.055911160391782 0.0 31 0.0 0.0 0.0 14.239033650857651 0.0 32 0.0 0.0 0.0 14.432516282221439 0.0 33 2.800038080517895E-4 0.0 0.0 14.63159898974626 0.0 34 2.800038080517895E-4 0.0 0.0 14.834601750583808 0.0 35 2.800038080517895E-4 0.0 0.0 15.046564633279013 0.0 36 2.800038080517895E-4 0.0 0.0 15.248167375076301 0.0 37 2.800038080517895E-4 0.0 0.0 15.448090094025279 0.0 38 2.800038080517895E-4 0.0 0.0 15.658372953872172 0.0 39 2.800038080517895E-4 0.0 0.0 15.888256080282693 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGGGT 55 1.8189894E-12 45.0 4 TAGCGGG 35 1.2087912E-7 45.0 3 CTACGGC 45 3.8380676E-10 45.0 6 GGGCGCA 20 7.0267497E-4 45.0 7 CGAGGGA 20 7.0267497E-4 45.0 4 CGGTGAA 20 7.0267497E-4 45.0 19 ATACCGC 20 7.0267497E-4 45.0 28 CACCGGT 105 0.0 44.999996 16 CGTTTTT 10900 0.0 44.6078 1 GGCGACT 115 0.0 43.043476 10 ACCGGTG 100 0.0 42.750004 17 GATACCT 870 0.0 42.413795 5 CCGGTGT 75 0.0 42.0 18 ACGGCTG 730 0.0 41.917805 8 CGGCTGT 680 0.0 41.691177 9 TACGGCT 735 0.0 41.632652 7 CGGTGTC 65 0.0 41.538464 19 CCGATGA 185 0.0 41.351353 18 GAATGAT 2835 0.0 41.19048 1 CGATGAA 175 0.0 41.142857 19 >>END_MODULE