SRR2933334.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933334.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	417731
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12206	2.9219761042393313	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCG	9026	2.1607206551584635	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTC	8893	2.128881983860427	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC	6732	1.611563422393837	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCT	2211	0.5292879867666034	TruSeq Adapter, Index 3 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTGCATGT	1959	0.46896208325453465	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTC	1726	0.4131845613564711	No Hit
GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC	1625	0.38900632225044346	RNA PCR Primer, Index 24 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTA	1423	0.3406498440383883	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCT	1262	0.3021082945723444	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTT	772	0.18480792663221068	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGTGCATGTCGT	668	0.1599115220081823	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATGG	20	7.028124E-4	45.000004	2
TACGGGT	20	7.028124E-4	45.000004	4
CCCACGA	25	3.8865277E-5	45.0	39
CTACGGG	25	3.8865277E-5	45.0	3
TGATGCG	25	3.8865277E-5	45.0	4
CGTTTTT	9590	0.0	43.92075	1
GATACCT	1060	0.0	43.726414	5
ATACCTG	1080	0.0	42.916668	6
TGATACC	1075	0.0	42.906975	4
TACGGCT	830	0.0	42.560238	7
ACGGCTG	855	0.0	41.57895	8
TACCTGT	1140	0.0	41.44737	7
CTACGAA	60	3.6379788E-12	41.249996	11
TACGAAT	60	3.6379788E-12	41.249996	12
ACCCGTC	60	3.6379788E-12	41.249996	17
GCTACGA	60	3.6379788E-12	41.249996	10
CACCCGT	60	3.6379788E-12	41.249996	16
TACGGTG	55	6.002665E-11	40.909092	7
AATGATC	260	0.0	40.673077	2
TCGTTGA	50	1.0786607E-9	40.5	24