##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933334.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 417731 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.581953458086662 31.0 28.0 33.0 25.0 34.0 2 29.003363408509305 31.0 28.0 33.0 16.0 34.0 3 29.050302706765837 31.0 28.0 34.0 16.0 34.0 4 33.231388142129745 35.0 32.0 37.0 28.0 37.0 5 34.27928738829534 35.0 33.0 37.0 30.0 37.0 6 33.844739796663404 35.0 33.0 37.0 28.0 37.0 7 33.50175352080645 35.0 32.0 37.0 28.0 37.0 8 33.68858906808448 35.0 33.0 37.0 28.0 37.0 9 34.74965468208009 37.0 34.0 39.0 28.0 39.0 10 34.41370403441449 37.0 32.0 39.0 27.0 39.0 11 34.60063294320987 37.0 33.0 39.0 27.0 39.0 12 34.70289731908812 37.0 33.0 39.0 27.0 39.0 13 34.97580021592843 37.0 34.0 39.0 27.0 39.0 14 35.7373908089177 38.0 34.0 40.0 27.0 41.0 15 36.09680871182651 38.0 34.0 40.0 27.0 41.0 16 35.914837538990405 38.0 34.0 40.0 27.0 41.0 17 35.28540615850871 37.0 33.0 40.0 27.0 41.0 18 35.045696871910394 37.0 33.0 39.0 27.0 40.0 19 34.33671190311468 37.0 32.0 38.0 27.0 40.0 20 33.96859462189782 35.0 32.0 38.0 27.0 40.0 21 34.268704022445064 35.0 33.0 38.0 27.0 40.0 22 34.85393470917887 35.0 33.0 39.0 29.0 40.0 23 35.24041308880595 35.0 34.0 39.0 30.0 40.0 24 34.712046747787454 35.0 33.0 39.0 28.0 40.0 25 33.662775805482475 35.0 33.0 38.0 24.0 40.0 26 33.72658002398673 35.0 32.0 38.0 24.0 40.0 27 34.44029291577594 35.0 33.0 39.0 27.0 40.0 28 34.25319164725625 35.0 33.0 39.0 25.0 40.0 29 34.378710222607374 35.0 33.0 39.0 25.0 40.0 30 33.58954446761193 35.0 33.0 39.0 22.0 40.0 31 33.48368926414367 35.0 33.0 39.0 22.0 40.0 32 33.00997053127491 35.0 32.0 39.0 19.0 40.0 33 32.566048485748006 35.0 32.0 39.0 15.0 40.0 34 32.08958157283036 35.0 31.0 40.0 10.0 41.0 35 31.773165027254382 36.0 30.0 40.0 10.0 41.0 36 31.147142539098127 35.0 29.0 40.0 8.0 41.0 37 31.128048911859548 35.0 29.0 40.0 8.0 41.0 38 30.906882658936013 35.0 27.0 39.0 8.0 40.0 39 30.539933593628437 35.0 25.0 39.0 7.0 40.0 40 30.4549889761593 35.0 25.0 39.0 7.0 40.0 41 29.8932016058181 35.0 23.0 39.0 7.0 40.0 42 30.127464803904907 35.0 23.0 39.0 7.0 40.0 43 29.994130193832873 35.0 23.0 39.0 7.0 40.0 44 30.06075201505275 35.0 23.0 39.0 7.0 40.0 45 30.172591931171016 35.0 23.0 39.0 7.0 40.0 46 29.967263621804463 35.0 23.0 39.0 7.0 40.0 47 29.924245507276215 35.0 23.0 39.0 7.0 40.0 48 29.764542253268253 35.0 23.0 38.0 7.0 40.0 49 29.95626132606869 35.0 24.0 39.0 7.0 40.0 50 29.908397988178997 35.0 24.0 39.0 7.0 40.0 51 28.647490849374357 34.0 22.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 4.0 9 13.0 10 23.0 11 27.0 12 35.0 13 43.0 14 94.0 15 104.0 16 200.0 17 366.0 18 720.0 19 1435.0 20 2274.0 21 3354.0 22 4952.0 23 7078.0 24 10303.0 25 15007.0 26 18881.0 27 19758.0 28 18740.0 29 17664.0 30 18358.0 31 20822.0 32 24566.0 33 29335.0 34 33413.0 35 39434.0 36 44241.0 37 46350.0 38 35146.0 39 4989.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.794111521529405 2.643806660267014 35.31315607412426 36.24892574407932 2 35.99014676909303 13.720791609911643 35.21117657056814 15.07788505042719 3 13.396180795775273 13.895305830785839 57.45180510902949 15.256708264409394 4 11.932798858595604 3.1965547206216445 67.38140094941481 17.489245471367937 5 20.194814366183024 3.621229930266128 57.99737151420412 18.186584189346732 6 14.74489563858081 12.563587571906323 60.76996919069928 11.921547598813591 7 57.13150328800113 1.2060392932293749 39.09142486432656 2.571032554442931 8 56.594315480536515 8.915306740462164 31.513581706887926 2.9767960721133937 9 53.41260284728689 2.7766672810971653 31.08938527425544 12.7213445973605 10 32.651155887401224 16.86827168680323 37.46956773617471 13.011004689620833 11 25.84270738824746 16.934821691471306 43.175871553703224 14.046599366578013 12 19.59538554715834 16.07278368136432 46.81290112536537 17.51892964611197 13 19.102724001809776 16.126167318202384 51.886979898547146 12.884128781440687 14 16.448384247278753 20.29009099157113 46.76382648163531 16.497698279514807 15 13.908472198615856 15.497772489951666 53.96463274212352 16.629122569308958 16 16.74522599471909 17.620669761162087 45.02083876944732 20.6132654746715 17 17.39612334253383 18.002494428232524 48.41225573395319 16.189126495280455 18 17.746109338306233 16.295893768956578 47.908582317328616 18.049414575408576 19 17.12537494224752 18.771889086517398 44.523150065472755 19.579585905762322 20 19.27125351003397 19.124268967349803 48.39478037301517 13.20969714960106 21 18.88440168433753 21.773342174748823 45.64085499998803 13.70140114092562 22 17.529941517387986 15.234684521857368 48.27341040047303 18.961963560281617 23 17.441367770167883 20.750195700103653 47.414723829450054 14.393712700278408 24 18.537288350637134 17.70397696125018 45.59369546430598 18.16503922380671 25 16.562093787628882 23.928796282775277 43.13230284561117 16.37680708398467 26 16.326296109218614 16.60494433020293 47.33596501097596 19.732794549602495 27 18.724729550835345 17.805717076300297 44.81975242440709 18.64980094845726 28 13.895305830785839 19.58006468277432 48.10583844627284 18.418791040166997 29 19.08836069144976 17.259432505607673 46.12561672463858 17.52659007830398 30 19.36150297679607 19.794556784150565 45.85798037493028 14.985959864123084 31 19.63991180927439 17.364524059741797 45.026105316579326 17.969458814404486 32 22.995420497880215 19.752185018588516 41.707223069391546 15.545171414139721 33 19.557083386198297 18.711323794499332 38.36823218769974 23.363360631602635 34 19.13935044322782 22.845084516112042 42.36027491376029 15.655290126899846 35 20.694178789699592 22.23751648788335 39.23888818402273 17.829416538394323 36 21.789141816144838 22.976030028894193 37.952653741283264 17.2821744136777 37 23.555110824908855 23.29920451199456 36.04376979443709 17.101914868659495 38 21.14829878558211 23.153895688852398 35.623164189394615 20.074641336170885 39 23.817480627485153 24.677364141038133 33.530190481434225 17.974964750042492 40 21.74341861149879 22.003633917521086 37.122215013968315 19.13073245701181 41 22.199214326923308 25.758203245629364 32.87594169453548 19.166640732911848 42 19.97457694066277 22.646631444637816 38.84054571003828 18.53824590466113 43 23.774869473417105 20.90914966808784 34.08724753489686 21.2287333235982 44 23.047367803682274 22.15061846020525 33.65850272065037 21.143511015462106 45 19.87834276125066 21.32353117197431 34.99237547608389 23.805750590691137 46 23.889536567791232 23.243666378602498 32.75217783693334 20.11461921667293 47 17.670941347422144 22.48217154101563 40.072199573409684 19.774687538152545 48 20.15746975924698 25.21143989792474 33.17828937761382 21.452800965214454 49 19.66648393344042 21.924635710540993 38.24111689101359 20.16776346500499 50 20.483516904419353 21.519829746894533 35.77182445162078 22.224828897065336 51 19.58581000691833 21.676868606830713 34.434600257103256 24.302721129147706 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 55.0 1 691.0 2 1327.0 3 13255.5 4 25184.0 5 18380.0 6 11576.0 7 11008.0 8 10440.0 9 10045.0 10 9650.0 11 9230.0 12 8810.0 13 8221.0 14 7632.0 15 7273.5 16 6915.0 17 6310.0 18 5705.0 19 5397.5 20 5090.0 21 4810.0 22 4530.0 23 4484.0 24 4438.0 25 4556.5 26 4919.5 27 5164.0 28 5382.0 29 5600.0 30 6171.0 31 6742.0 32 7278.0 33 7814.0 34 8693.0 35 9572.0 36 10041.0 37 10510.0 38 11061.0 39 11612.0 40 12129.5 41 12647.0 42 13332.0 43 14017.0 44 14964.0 45 15911.0 46 33461.5 47 51012.0 48 37335.5 49 23659.0 50 22395.5 51 21132.0 52 19678.5 53 18225.0 54 18286.0 55 18347.0 56 17889.0 57 17431.0 58 16433.0 59 15435.0 60 13932.0 61 12429.0 62 11169.0 63 9909.0 64 8722.0 65 7535.0 66 6567.0 67 5599.0 68 4769.5 69 3940.0 70 3326.0 71 2712.0 72 2284.0 73 1856.0 74 1592.5 75 1090.0 76 851.0 77 642.0 78 433.0 79 285.5 80 138.0 81 103.0 82 68.0 83 49.0 84 30.0 85 25.5 86 21.0 87 18.5 88 16.0 89 9.5 90 3.0 91 3.0 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 417731.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.37969387448662 #Duplication Level Percentage of deduplicated Percentage of total 1 78.91377440584321 39.75651797046678 2 7.694852685043825 7.753286453635587 3 4.25343828338703 6.428607558931813 4 2.826305404575479 5.695536043132789 5 1.9517133337922936 4.916336014360474 6 1.3199195544089353 3.989828585404257 7 0.9277795265348403 3.2718873970888978 8 0.5685547415902056 2.291489106576192 9 0.40497009779801396 1.8362042599846367 >10 1.0553564267678346 8.097577789048785 >50 0.050097665820063676 1.798767727195783 >100 0.027457374535983285 2.3930988340355346 >500 9.634166503853785E-4 0.3494637786239904 >1k 0.0028902499511561353 2.4768245309975323 >5k 0.0014451249755780677 5.982383060319436 >10k+ 4.8170832519268925E-4 2.962190890197519 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12206 2.9219761042393313 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCG 9026 2.1607206551584635 No Hit GAATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTC 8893 2.128881983860427 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC 6732 1.611563422393837 No Hit GAACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCT 2211 0.5292879867666034 TruSeq Adapter, Index 3 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTGCATGT 1959 0.46896208325453465 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTC 1726 0.4131845613564711 No Hit GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC 1625 0.38900632225044346 RNA PCR Primer, Index 24 (95% over 23bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTA 1423 0.3406498440383883 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCT 1262 0.3021082945723444 No Hit GAATGCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTT 772 0.18480792663221068 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGTGCATGTCGT 668 0.1599115220081823 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04668075867005322 0.0 2 0.0 0.0 0.0 0.4919433798305608 0.0 3 0.0 0.0 0.0 0.5778838534846588 0.0 4 0.0 0.0 0.0 1.2022090771333704 0.0 5 0.0 0.0 0.0 3.721054937268242 0.0 6 0.0 0.0 0.0 4.003054597336564 0.0 7 0.0 0.0 0.0 4.42102692881304 0.0 8 0.0 0.0 0.0 4.985265637455683 0.0 9 0.0 0.0 0.0 5.096820681251811 0.0 10 0.0 0.0 0.0 7.652292982804724 0.0 11 0.0 0.0 0.0 7.818907382980914 0.0 12 0.0 0.0 0.0 9.857779288585238 0.0 13 0.0 0.0 0.0 10.021999803701425 0.0 14 0.0 0.0 0.0 10.168505569373592 0.0 15 0.0 0.0 0.0 10.619513514678106 0.0 16 0.0 0.0 0.0 10.86775939540039 0.0 17 0.0 0.0 0.0 10.987932425412525 0.0 18 0.0 0.0 0.0 11.071718402512621 0.0 19 0.0 0.0 0.0 11.733867010109376 0.0 20 0.0 0.0 0.0 11.863854968867525 0.0 21 0.0 0.0 0.0 11.94788033447362 0.0 22 0.0 0.0 0.0 12.162611824355865 0.0 23 0.0 0.0 0.0 12.27177298309199 0.0 24 0.0 0.0 0.0 12.365373888938096 0.0 25 0.0 0.0 0.0 12.442217599364184 0.0 26 0.0 0.0 0.0 12.539888109812296 0.0 27 0.0 2.393885060002729E-4 0.0 12.679212220304453 0.0 28 0.0 2.393885060002729E-4 0.0 12.769222298560557 0.0 29 0.0 2.393885060002729E-4 0.0 12.860429319346661 0.0 30 0.0 2.393885060002729E-4 0.0 12.986587062008805 0.0 31 0.0 2.393885060002729E-4 0.0 13.081145521878913 0.0 32 0.0 2.393885060002729E-4 0.0 13.19317934268704 0.0 33 0.0 2.393885060002729E-4 0.0 13.300186004869163 0.0 34 0.0 2.393885060002729E-4 0.0 13.458661195841342 0.0 35 0.0 2.393885060002729E-4 0.0 13.592958147707495 0.0 36 0.0 2.393885060002729E-4 0.0 13.721988552441642 0.0 37 0.0 2.393885060002729E-4 0.0 13.871845757197814 0.0 38 0.0 2.393885060002729E-4 0.0 14.048275086120015 0.0 39 0.0 2.393885060002729E-4 0.0 14.32524758756233 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATGG 20 7.028124E-4 45.000004 2 TACGGGT 20 7.028124E-4 45.000004 4 CCCACGA 25 3.8865277E-5 45.0 39 CTACGGG 25 3.8865277E-5 45.0 3 TGATGCG 25 3.8865277E-5 45.0 4 CGTTTTT 9590 0.0 43.92075 1 GATACCT 1060 0.0 43.726414 5 ATACCTG 1080 0.0 42.916668 6 TGATACC 1075 0.0 42.906975 4 TACGGCT 830 0.0 42.560238 7 ACGGCTG 855 0.0 41.57895 8 TACCTGT 1140 0.0 41.44737 7 CTACGAA 60 3.6379788E-12 41.249996 11 TACGAAT 60 3.6379788E-12 41.249996 12 ACCCGTC 60 3.6379788E-12 41.249996 17 GCTACGA 60 3.6379788E-12 41.249996 10 CACCCGT 60 3.6379788E-12 41.249996 16 TACGGTG 55 6.002665E-11 40.909092 7 AATGATC 260 0.0 40.673077 2 TCGTTGA 50 1.0786607E-9 40.5 24 >>END_MODULE