SRR2933333.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933333.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	317597
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18815	5.924174346735013	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCG	3475	1.094153912033174	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC	2308	0.7267071162510981	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTC	2057	0.6476761430366156	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTGCATGT	1016	0.3199022660793395	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCT	697	0.21946051127686972	TruSeq Adapter, Index 3 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC	669	0.21064430709358084	RNA PCR Primer, Index 24 (95% over 23bp)
GAATGATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTC	469	0.14767142007008882	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTA	433	0.13633630040586026	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGCT	20	7.025567E-4	45.000004	34
CGATGAA	75	0.0	45.000004	19
AGATGCG	20	7.025567E-4	45.000004	10
CGTTTTT	8530	0.0	44.261433	1
CGACCAC	370	0.0	42.567566	12
GCGATTC	80	0.0	42.187504	9
TACGGCT	270	0.0	40.833332	7
GAATGAT	1385	0.0	40.61372	1
TGGGACG	50	1.0768417E-9	40.5	6
TACGGCG	595	0.0	40.462185	7
GCGACCA	395	0.0	40.443035	11
ATACGGC	865	0.0	40.317917	6
GAATCTG	330	0.0	40.227272	1
CCGATGA	90	0.0	40.0	18
ACGGCGA	585	0.0	40.0	8
TGATACC	445	0.0	39.943817	4
ACCACCG	175	0.0	39.857143	14
AATGATA	1325	0.0	39.73585	2
CGGCGAC	590	0.0	39.66102	9
AATCTGT	335	0.0	39.626865	2