##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933333.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 317597 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.85179016174586 31.0 28.0 31.0 16.0 33.0 2 29.416150026606044 31.0 30.0 33.0 16.0 34.0 3 29.633227014109075 31.0 30.0 33.0 16.0 34.0 4 32.25784563456204 35.0 32.0 37.0 19.0 37.0 5 33.59300308252282 35.0 33.0 37.0 28.0 37.0 6 33.096798773288164 35.0 33.0 37.0 26.0 37.0 7 31.6861053473427 35.0 30.0 35.0 23.0 37.0 8 33.131906157803755 35.0 33.0 35.0 28.0 37.0 9 32.69644864403631 35.0 31.0 37.0 25.0 39.0 10 30.724896645749173 35.0 27.0 39.0 15.0 39.0 11 31.510140209132956 35.0 27.0 39.0 15.0 39.0 12 32.53053712723987 35.0 30.0 39.0 19.0 39.0 13 32.752588972817755 35.0 31.0 39.0 21.0 39.0 14 33.037777434925395 36.0 31.0 39.0 17.0 41.0 15 33.73878216733785 36.0 31.0 39.0 23.0 41.0 16 33.91864217861 36.0 32.0 40.0 23.0 41.0 17 31.92934127211529 35.0 27.0 39.0 17.0 41.0 18 32.7368961293715 36.0 30.0 39.0 21.0 39.0 19 32.4931060431931 36.0 30.0 37.0 18.0 39.0 20 32.429475089500215 34.0 30.0 37.0 24.0 39.0 21 32.65901755998954 35.0 31.0 37.0 23.0 39.0 22 32.9961114242263 35.0 31.0 38.0 25.0 39.0 23 34.12712336703432 35.0 33.0 38.0 27.0 40.0 24 32.260137847649695 35.0 30.0 37.0 21.0 39.0 25 31.37023964332157 34.0 29.0 37.0 18.0 39.0 26 30.783502363057586 33.0 25.0 37.0 19.0 39.0 27 32.34624382472126 34.0 30.0 38.0 22.0 39.0 28 32.42429871818688 35.0 31.0 38.0 21.0 39.0 29 32.818439720778215 35.0 31.0 38.0 22.0 40.0 30 31.66873112781292 35.0 30.0 38.0 18.0 40.0 31 31.946246343636748 35.0 30.0 38.0 21.0 40.0 32 31.805590103181075 35.0 30.0 38.0 18.0 40.0 33 31.912971470133535 35.0 30.0 38.0 16.0 40.0 34 31.19745463590651 35.0 30.0 38.0 12.0 40.0 35 30.671105205653706 35.0 29.0 38.0 10.0 40.0 36 30.077459799683247 35.0 26.0 38.0 8.0 40.0 37 30.259848172369388 35.0 27.0 38.0 8.0 40.0 38 30.22658904208793 35.0 26.0 38.0 8.0 40.0 39 29.787601898002816 34.0 25.0 38.0 8.0 40.0 40 29.67634454985406 34.0 24.0 38.0 8.0 40.0 41 29.13504850486623 34.0 23.0 38.0 8.0 40.0 42 29.578859372097345 34.0 24.0 38.0 8.0 40.0 43 29.553317569120615 34.0 23.0 38.0 7.0 40.0 44 29.527719090545567 34.0 23.0 38.0 7.0 40.0 45 29.74464179447539 35.0 24.0 38.0 7.0 40.0 46 29.5769985232858 34.0 23.0 38.0 7.0 40.0 47 29.675963563887567 34.0 24.0 38.0 7.0 40.0 48 29.335623447324753 34.0 23.0 38.0 7.0 40.0 49 29.082847130168105 34.0 24.0 37.0 7.0 39.0 50 29.295364880650634 34.0 24.0 37.0 7.0 40.0 51 27.733715998576812 32.0 22.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 20.0 10 18.0 11 34.0 12 33.0 13 58.0 14 81.0 15 202.0 16 336.0 17 615.0 18 1065.0 19 1588.0 20 2577.0 21 3562.0 22 5056.0 23 6913.0 24 9271.0 25 12615.0 26 15700.0 27 16822.0 28 17023.0 29 17958.0 30 19751.0 31 22645.0 32 25576.0 33 29352.0 34 32659.0 35 34737.0 36 25545.0 37 13084.0 38 2642.0 39 56.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.082683400661843 2.7934772683621065 39.11560877464208 38.00823055633397 2 38.404330015711736 7.675765199293444 38.9698265411827 14.950078243812126 3 14.49950723715904 7.734644848660409 62.3806270210361 15.385220893144458 4 13.127642893352268 3.2859252448858145 65.41969854878982 18.1667333129721 5 16.769364949920814 3.7012314348057442 61.4772809566841 18.052122658589344 6 15.542023381832951 8.003853940685838 63.45085123600034 13.003271441480871 7 59.20144081965509 1.3476197823027296 36.592914920480986 2.858024477561186 8 61.150136808597054 5.238084742614067 30.731713460769466 2.880064988019408 9 57.083032900184826 2.7714367579038846 31.376555823890023 8.768974518021267 10 31.891674039742192 17.98946463600097 37.40558002751915 12.713281296737689 11 24.29210603374717 18.13587659833059 43.82220235077787 13.749815017144368 12 19.683435296932906 16.730321759966245 47.28004357723782 16.306199365863026 13 18.269064254385274 16.929945811830716 50.91641293840937 13.884576995374642 14 16.428051902253486 17.44758294316382 48.85908871935188 17.26527643523081 15 14.598374669785924 16.025025425303134 52.47908512989732 16.897514775013615 16 17.082969927297803 15.96740523367664 47.22242338561132 19.727201453414235 17 17.61603541595166 16.84934051644065 48.68150517794563 16.853118889662056 18 18.003948400016373 15.59555033580292 48.41355554366068 17.98694572052003 19 17.72403391719695 18.043306454406054 45.74759837152114 18.485061256875852 20 19.45326939486204 18.51528824264713 47.86285764664024 14.16858471585059 21 19.60094081493213 19.294262855127727 45.997285868569286 15.107510461370858 22 18.415161352279778 16.217407595159905 47.70101732698986 17.666413725570457 23 17.951366039351758 19.594328661794663 46.56498644508607 15.889318853767511 24 17.412318126430666 17.58549356574527 47.03917228437297 17.963016023451104 25 17.33706552643759 19.683120432497788 44.879202259467185 18.100611781597433 26 16.623897580896546 17.743240647739118 46.994461534586286 18.638400236778054 27 16.9567092888157 17.793933821793026 46.546094578979016 18.703262310412253 28 15.07633888229423 19.114160398240536 48.037922272565545 17.77157844689969 29 18.34903982090511 17.37957222517845 46.220524753067565 18.050863200848873 30 18.2803993740495 18.584243553937853 46.500754100322105 16.634602971690537 31 18.79016489450467 18.406345148096488 45.50798653639676 17.29550342100209 32 20.394084326993013 19.477513956366085 43.60431616167659 16.52408555496431 33 19.19224677814967 18.73569334722935 41.44780964555711 20.624250229063875 34 18.51875175143342 21.87709581639625 42.74851462702733 16.855637805142994 35 19.256479122913632 22.680944719251126 40.21983834859901 17.842737809236233 36 20.745787901019217 22.47502337868431 39.0601926340614 17.718996086235073 37 22.092148225581475 23.14190625226309 37.41534082500779 17.35060469714764 38 20.513417947902532 22.870807973626956 38.05703454377717 18.558739534693338 39 21.602534028973825 23.94858893503402 36.137620947301144 18.311256088691014 40 21.470920695094726 22.496434160272294 37.708164749667034 18.324480394965946 41 20.744213578843627 24.05532797853884 36.53120149119796 18.669256951419566 42 19.83645941239999 22.597190779509884 38.73651199476066 18.82983781332947 43 21.399761332758178 21.313803341971113 37.202807331303504 20.083627993967198 44 21.612924555332704 22.366080284133666 36.04945890546825 19.97153625506538 45 19.369515455120798 21.833329659914924 37.17604385431852 21.621111030645757 46 21.54963680387409 22.794925644763648 35.6212432737085 20.034194277653754 47 18.117929325528895 22.41519913601199 40.11530335614001 19.351568182319102 48 19.679656923711498 23.809103990276988 36.28088426527958 20.230354820731932 49 19.288910159730726 22.25146962975091 38.57876491276681 19.880855297751555 50 19.80938107097989 21.959590298397025 37.21508704427309 21.01594158635 51 19.282927735463495 21.491386883377363 37.02648324763773 22.19920213352141 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 68.0 1 370.0 2 672.0 3 14045.0 4 27418.0 5 18161.0 6 8904.0 7 8339.0 8 7774.0 9 7550.0 10 7326.0 11 6976.5 12 6627.0 13 6225.0 14 5823.0 15 5423.0 16 5023.0 17 4585.0 18 4147.0 19 3792.5 20 3438.0 21 3229.0 22 3020.0 23 2978.5 24 2937.0 25 2970.5 26 3238.0 27 3472.0 28 3715.0 29 3958.0 30 4396.0 31 4834.0 32 5325.0 33 5816.0 34 6610.0 35 7404.0 36 7684.0 37 7964.0 38 8671.5 39 9379.0 40 9743.5 41 10108.0 42 10700.0 43 11292.0 44 11873.5 45 12455.0 46 18381.0 47 24307.0 48 21588.5 49 18870.0 50 17955.5 51 17041.0 52 16177.0 53 15313.0 54 14564.0 55 13815.0 56 13488.0 57 13161.0 58 12379.0 59 11597.0 60 10629.0 61 9661.0 62 8971.5 63 8282.0 64 7358.0 65 6434.0 66 5802.0 67 5170.0 68 4500.0 69 3830.0 70 3211.0 71 2592.0 72 2206.0 73 1820.0 74 1551.0 75 1048.5 76 815.0 77 629.0 78 443.0 79 303.5 80 164.0 81 119.5 82 75.0 83 52.0 84 29.0 85 24.0 86 19.0 87 12.5 88 6.0 89 5.0 90 4.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 317597.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.01213320079605 #Duplication Level Percentage of deduplicated Percentage of total 1 77.33755879027004 39.451538504336504 2 8.712585839885584 8.888951787752259 3 4.491888825134479 6.87422493212782 4 2.8444270561987346 5.804011674830321 5 1.9960360614041284 5.091102871896987 6 1.3227090935183399 4.048452747867705 7 0.9294122630974354 3.318791151450578 8 0.6727880273648975 2.745628197427118 9 0.4617665687503398 2.1200127941490194 >10 1.1533987954769171 8.517610413494207 >50 0.05098961781161301 1.7754842039808045 >100 0.022032550906252533 2.0397677091130535 >500 0.001259002908928716 0.4386528165378512 >1k 0.002518005817857432 2.8438574987256295 >5k 0.0 0.0 >10k+ 6.29501454464358E-4 6.0419126963101535 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18815 5.924174346735013 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCG 3475 1.094153912033174 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC 2308 0.7267071162510981 No Hit GAATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTC 2057 0.6476761430366156 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTGCATGT 1016 0.3199022660793395 No Hit GAACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCT 697 0.21946051127686972 TruSeq Adapter, Index 3 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC 669 0.21064430709358084 RNA PCR Primer, Index 24 (95% over 23bp) GAATGATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTC 469 0.14767142007008882 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTA 433 0.13633630040586026 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07619719329842536 0.0 2 0.0 0.0 0.0 0.39578459494264745 0.0 3 0.0 0.0 0.0 0.5129141648063427 0.0 4 0.0 0.0 0.0 0.8857136559854155 0.0 5 0.0 0.0 0.0 1.7600921923066024 0.0 6 0.0 0.0 0.0 2.053545845836075 0.0 7 0.0 0.0 0.0 2.3000846985330465 0.0 8 0.0 0.0 0.0 2.6653274432693004 0.0 9 0.0 0.0 0.0 2.849523137813015 0.0 10 0.0 0.0 0.0 4.337572458178132 0.0 11 0.0 0.0 0.0 4.756027292449236 0.0 12 0.0 0.0 0.0 5.900244649666086 0.0 13 0.0 0.0 0.0 6.048860663041528 0.0 14 0.0 0.0 0.0 6.155599706546346 0.0 15 0.0 0.0 0.0 6.421030425350366 0.0 16 0.0 0.0 0.0 6.597354509016143 0.0 17 0.0 0.0 0.0 6.736209724902943 0.0 18 0.0 0.0 0.0 6.877583856270682 0.0 19 0.0 0.0 0.0 7.3876642411609685 0.0 20 0.0 0.0 0.0 7.551708611857165 0.0 21 0.0 0.0 0.0 7.704102998454015 0.0 22 0.0 0.0 0.0 7.939621595921876 0.0 23 0.0 0.0 0.0 8.124761883770942 0.0 24 0.0 0.0 0.0 8.2736927615815 0.0 25 0.0 0.0 0.0 8.411603384162948 0.0 26 0.0 0.0 0.0 8.548884277874162 0.0 27 0.0 0.0 0.0 8.69403678246331 0.0 28 0.0 0.0 0.0 8.822501471991234 0.0 29 0.0 0.0 0.0 8.969543163191089 0.0 30 0.0 0.0 0.0 9.139569958154517 0.0 31 0.0 0.0 0.0 9.264886003331267 0.0 32 0.0 0.0 0.0 9.423892543065584 0.0 33 0.0 0.0 0.0 9.581324760624312 0.0 34 0.0 0.0 0.0 9.743794809144923 0.0 35 0.0 0.0 0.0 9.929249961429107 0.0 36 0.0 0.0 0.0 10.09360919656042 0.0 37 0.0 0.0 0.0 10.257968431691735 0.0 38 0.0 0.0 0.0 10.452554652594326 0.0 39 0.0 0.0 0.0 10.759547476833848 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGCT 20 7.025567E-4 45.000004 34 CGATGAA 75 0.0 45.000004 19 AGATGCG 20 7.025567E-4 45.000004 10 CGTTTTT 8530 0.0 44.261433 1 CGACCAC 370 0.0 42.567566 12 GCGATTC 80 0.0 42.187504 9 TACGGCT 270 0.0 40.833332 7 GAATGAT 1385 0.0 40.61372 1 TGGGACG 50 1.0768417E-9 40.5 6 TACGGCG 595 0.0 40.462185 7 GCGACCA 395 0.0 40.443035 11 ATACGGC 865 0.0 40.317917 6 GAATCTG 330 0.0 40.227272 1 CCGATGA 90 0.0 40.0 18 ACGGCGA 585 0.0 40.0 8 TGATACC 445 0.0 39.943817 4 ACCACCG 175 0.0 39.857143 14 AATGATA 1325 0.0 39.73585 2 CGGCGAC 590 0.0 39.66102 9 AATCTGT 335 0.0 39.626865 2 >>END_MODULE