SRR2933332.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933332.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	428249
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16028	3.742682411400844	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	9020	2.1062512697052416	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG	7780	1.8167000973732572	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC	6979	1.6296593804071928	No Hit
GAACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCT	1901	0.44390062790572776	No Hit
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	1784	0.41658007374214534	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTC	1440	0.3362529743210142	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAAGCAGT	1304	0.3044957489684739	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCT	1291	0.301460131839187	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTT	1123	0.26223061816840204	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTA	1073	0.2505551676711446	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGT	546	0.1274959194300512	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	498	0.11628748695268407	No Hit
GCGCGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	491	0.11465292388306804	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	441	0.1029774733858106	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGTACG	30	2.1623E-6	45.000004	7
GTTCGGT	30	2.1623E-6	45.000004	9
TAGGGCG	30	2.1623E-6	45.000004	5
CTACCGG	20	7.028322E-4	45.000004	2
ATACGGT	20	7.028322E-4	45.000004	6
AAGTGCG	20	7.028322E-4	45.000004	12
ACCGGTC	25	3.8866925E-5	45.0	17
TACGGTG	25	3.8866925E-5	45.0	7
ACGGCCT	25	3.8866925E-5	45.0	8
CGTTTTT	12695	0.0	44.432846	1
TGATACC	920	0.0	42.798912	4
GATACCT	920	0.0	42.798912	5
TTCGTTG	90	0.0	42.5	1
TTTCGCG	85	0.0	42.35294	1
TACGGCT	840	0.0	42.05357	7
CGGCTGT	845	0.0	41.538464	9
ACGGCTG	855	0.0	41.31579	8
TACCTGT	960	0.0	41.250004	7
CGTTTGG	110	0.0	40.909092	2
ATACCTG	965	0.0	40.80311	6