SRR2933328.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933328.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	637128
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18985	2.9797780037920165	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC	15036	2.3599653444833693	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG	13917	2.184333446340453	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC	10893	1.7097035446566469	No Hit
GAACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCT	3415	0.535999045717658	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTC	2611	0.4098077623334715	No Hit
GCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	2541	0.3988209590537537	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAGTGCTT	2407	0.3777890784897226	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCT	2235	0.3507929332881305	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTA	1906	0.29915495787345714	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTT	1484	0.23292022953001595	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGT	961	0.15083311359726775	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTC	35	1.2107921E-7	45.000004	17
ACCCGGC	20	7.030918E-4	45.0	39
ATACGCC	20	7.030918E-4	45.0	6
CGTTAGG	25	3.8888425E-5	44.999996	2
GTTACGG	25	3.8888425E-5	44.999996	2
CGTTTTT	17740	0.0	44.429256	1
GATACCT	1625	0.0	43.338463	5
TGATACC	1640	0.0	42.80488	4
ACGGCTG	1465	0.0	42.696243	8
TACGGCT	1475	0.0	42.559322	7
CGGCTGT	1520	0.0	41.44737	9
CCGATGA	450	0.0	41.0	18
ATGATAC	5125	0.0	40.785366	3
AATCTGT	1925	0.0	40.675327	2
ATACCTG	1760	0.0	40.52557	6
GCGACTG	245	0.0	40.408165	11
GAATGAT	5300	0.0	40.33019	1
GAATCTG	1940	0.0	40.244843	1
AATGATA	5115	0.0	40.117302	2
ATACGGC	3445	0.0	40.036285	6