SRR2933327.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933327.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	428309
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24205	5.651293808908989	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCG	6111	1.4267736610717963	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGC	4082	0.9530502511037592	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC	3931	0.9177953300070744	No Hit
GAACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCT	1167	0.27246684052868375	No Hit
GCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTCTGC	1045	0.2439827320929516	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAGTGCTT	1039	0.24258187430103031	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTC	779	0.18187803665110938	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTA	574	0.1340153954271332	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCAGAGTGCTTCGTATGCCG	517	0.12070724640388131	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCT	505	0.1179055308200388	No Hit
GAATCTTTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCCGTCTTC	474	0.110667765561779	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGTGCTTCGTATGCC	456	0.10646519218601525	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	443	0.10343000030351918	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTCG	20	7.0283253E-4	45.0	1
ACCGGTG	35	1.209537E-7	45.0	17
TCAAGCG	45	3.8380676E-10	45.0	17
CACCGCT	30	2.1623018E-6	44.999996	16
CGTTTTT	12785	0.0	44.56003	1
TACGGCT	525	0.0	42.428574	7
ACGGCTG	535	0.0	41.635517	8
AATGATC	200	0.0	41.625	2
CACCGGT	55	6.002665E-11	40.909092	16
GAATCTG	575	0.0	40.695652	1
ATACGGC	1175	0.0	40.595745	6
ATGATAC	2035	0.0	40.577393	3
GCGAGAC	50	1.0786607E-9	40.5	21
ACACGAC	50	1.0786607E-9	40.5	26
CACGACC	50	1.0786607E-9	40.5	27
ACGACCA	50	1.0786607E-9	40.5	28
TGCGTTG	50	1.0786607E-9	40.5	1
GTTTTTT	14245	0.0	40.293083	2
CGATGAA	95	0.0	40.263157	19
GAATGAT	2200	0.0	40.090908	1