SRR2933324.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933324.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	706400
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18347	2.5972536806342017	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTC	14425	2.042044167610419	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCG	13130	1.8587202718006794	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGC	11755	1.664071347678369	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCT	3810	0.5393544733861835	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTC	2754	0.38986409966024915	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTAGCTAT	2550	0.36098527746319364	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	2395	0.33904303510758776	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTA	2326	0.32927519818799544	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCT	2160	0.30577576443941107	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	1270	0.17978482446206118	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTT	1121	0.15869195922989807	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGT	983	0.13915628539071348	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATACG	25	3.8892726E-5	45.000004	26
TATACGG	25	3.8892726E-5	45.000004	27
ACGATAC	20	7.031438E-4	45.0	3
TACGCGC	30	2.16431E-6	44.999996	34
TCATACG	30	2.16431E-6	44.999996	31
CGTTTTT	16090	0.0	44.300808	1
TGATACC	1585	0.0	42.728706	4
GATACCT	1600	0.0	42.60938	5
ATCGACG	70	0.0	41.785717	1
ACGGCTG	1400	0.0	41.785713	8
CCGATGA	340	0.0	41.691177	18
CGATGTG	65	0.0	41.538464	10
AGCTACG	65	0.0	41.538464	9
TACGGCT	1410	0.0	41.48936	7
CTACGAA	60	3.6379788E-12	41.249996	11
CGATGAA	360	0.0	40.625004	19
GAATGAT	5315	0.0	40.216366	1
ATGATAC	5160	0.0	40.159885	3
ATACCTG	1710	0.0	40.13158	6
GACCGAT	225	0.0	40.0	9