SRR2933323.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933323.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	484870
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27132	5.5957266896281475	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCG	6189	1.276424608657991	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGC	4927	1.0161486584032833	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTC	4499	0.9278775754325902	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCT	1639	0.3380287499742199	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	1302	0.2685255841772022	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTAGCTAT	1257	0.2592447460143956	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTC	917	0.18912285767319076	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTA	857	0.17674840678944873	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	663	0.1367376822653495	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCT	646	0.13323158784828923	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCGGTAGCTATCGTATGCCG	497	0.10250170148699651	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTAGCG	20	7.029247E-4	45.0	21
TATGCGT	20	7.029247E-4	45.0	11
GCTTACG	20	7.029247E-4	45.0	1
CTAGCGC	20	7.029247E-4	45.0	22
CGTTTTT	12685	0.0	44.414665	1
TAGGGAT	70	0.0	41.785713	5
TGATACC	765	0.0	41.764706	4
GATACCT	765	0.0	41.764706	5
ACGGCTG	675	0.0	41.333332	8
GAATGAT	2475	0.0	41.18182	1
AATGATA	2350	0.0	40.88298	2
TACGGCT	685	0.0	40.729927	7
ATGATAC	2385	0.0	40.566036	3
AGACACG	190	0.0	40.263157	24
ACACGAC	185	0.0	40.135136	26
AACACGT	180	0.0	40.0	41
GTTTTTT	14385	0.0	39.603752	2
ATCCGGG	40	3.4527147E-7	39.375	3
TATACGG	40	3.4527147E-7	39.375	27
CTTACGG	40	3.4527147E-7	39.375	2