SRR2933320.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933320.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	374653
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTC	10232	2.7310604746258536	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCG	10188	2.719316273992201	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGC	9538	2.5458224009950543	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9091	2.4265119991031705	No Hit
GAACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCT	2480	0.6619458538968058	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTC	2175	0.5805371904135292	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCATGGTTGT	2124	0.5669245942245225	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTA	1737	0.46362901137852897	No Hit
GCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTTCTGC	1736	0.46336209772776404	TruSeq Adapter, Index 22 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCT	1668	0.4452119694757549	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCATGGTTGTCGT	703	0.18764029648768327	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATGCCGTCTT	571	0.15240769458672423	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTATG	467	0.12464867490718079	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCATGGTTGTCGTAT	446	0.11904348824111911	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCTAT	25	3.8857546E-5	45.000004	31
CGTATGG	20	7.027193E-4	45.0	2
CACGGAT	20	7.027193E-4	45.0	15
CGACCCG	20	7.027193E-4	45.0	32
CGTCTTG	20	7.027193E-4	45.0	1
CCGCTTG	20	7.027193E-4	45.0	1
TGGCACG	20	7.027193E-4	45.0	22
TCTACGG	20	7.027193E-4	45.0	2
TTGCACG	20	7.027193E-4	45.0	1
TGCACGG	35	1.2089913E-7	45.0	2
CCCGATC	45	3.8380676E-10	45.0	41
CGTTTTT	7275	0.0	44.319584	1
CGATGAA	345	0.0	43.04348	19
GCGACCT	110	0.0	42.954544	11
GAATGAC	175	0.0	42.42857	1
CGGCTGT	1200	0.0	42.375	9
ACGGCTG	1205	0.0	42.19917	8
TACGGCT	1210	0.0	41.83884	7
TGATACC	1175	0.0	41.74468	4
CCGATGA	345	0.0	41.739132	18