SRR2933316.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933316.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	799629
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTC	19990	2.4999093329531568	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18846	2.356842985934727	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCG	17904	2.2390383540366843	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGC	14037	1.755439084875611	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCT	4609	0.57639230193002	TruSeq Adapter, Index 27 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTC	3911	0.4891018209694746	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTTGCT	3346	0.4184440534297781	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	3326	0.4159428935168684	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCT	3071	0.38405310462727094	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTA	2938	0.36742039120642195	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTT	1630	0.20384453290213334	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGT	1170	0.1463178549052123	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTTC	30	2.1646683E-6	45.000004	15
CTCGTCG	20	7.0319965E-4	45.000004	1
TTCGCTA	20	7.0319965E-4	45.000004	21
CGTTTTT	20845	0.0	44.30919	1
TGATACC	2125	0.0	42.458824	4
TACGGCT	1935	0.0	41.860462	7
GATACCT	2145	0.0	41.748253	5
CGATGAA	535	0.0	41.635513	19
ACGGCTG	1925	0.0	41.61039	8
CGGCTGT	1950	0.0	41.192307	9
GAATCTG	2535	0.0	40.56213	1
TCAAGCG	50	1.0804797E-9	40.5	17
CCGATGA	545	0.0	40.458714	18
ATACCTG	2235	0.0	40.167786	6
TATGCGG	45	1.9270374E-8	40.0	2
ATGATAC	6865	0.0	39.919884	3
GAATGAT	7245	0.0	39.565216	1
AATCTGT	2600	0.0	39.46154	2
CGCGCAT	40	3.4564619E-7	39.375004	36
AATCGTT	40	3.4564619E-7	39.375004	22