SRR2933315.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933315.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	483433
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19776	4.090742667546485	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCG	8733	1.8064550827105306	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTC	6600	1.3652357203583538	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGC	5988	1.23864113537967	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCT	2177	0.4503209338212327	TruSeq Adapter, Index 27 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	1908	0.3946772355217786	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTTGCT	1792	0.37068218346699544	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTC	1416	0.29290511818597403	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTA	1060	0.2192651308454326	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCT	847	0.17520525077932206	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCTTCTTGCTCGTATGCCG	747	0.15451986107692275	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTT	674	0.13941952659417126	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGCT	585	0.12100952975903591	TruSeq Adapter, Index 27 (95% over 24bp)
GAATCTTTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTC	511	0.10570234137926042	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	20	7.029225E-4	45.000004	2
ACGGGGC	20	7.029225E-4	45.000004	5
CGAGCAA	20	7.029225E-4	45.000004	24
CCGAACA	20	7.029225E-4	45.000004	34
TGTACGG	30	2.162882E-6	45.000004	2
TTGTACG	25	3.887441E-5	45.0	1
CCGGTGA	25	3.887441E-5	45.0	18
CGTTTTT	13400	0.0	44.395523	1
TACGGCT	795	0.0	42.16981	7
TTATACG	70	0.0	41.785717	26
ACGGCTG	820	0.0	40.884148	8
GAATGAT	3290	0.0	40.69149	1
ATACGGA	50	1.0786607E-9	40.5	28
ATGCTAC	95	0.0	40.263157	3
CGATGAA	95	0.0	40.263157	19
CCGATGA	140	0.0	40.178574	18
CACCGGT	135	0.0	40.000004	16
GATACCT	1280	0.0	39.726566	5
CACGACC	85	0.0	39.705883	27
AATGATA	3140	0.0	39.697453	2