SRR2933314.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933314.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	600529
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22537	3.7528578969541857	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTC	15051	2.506290287396612	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCG	12579	2.094653214082917	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGC	8975	1.4945156686854424	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCT	3396	0.5655014162513383	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTC	2685	0.44710580171815184	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	2199	0.36617715380939136	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTGGACT	2151	0.3581842009295138	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCT	2012	0.33503794154820166	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTA	1766	0.29407405803882913	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTT	1568	0.2611031274093341	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTTGGACTCGT	812	0.1352141195512623	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	720	0.11989429319816361	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	645	0.1074053043233549	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	601	0.10007843085013379	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCA	25	3.888572E-5	45.000004	10
CGACGTC	20	7.030592E-4	45.0	45
AGGGATA	20	7.030592E-4	45.0	6
CGTTTTT	16795	0.0	44.169395	1
GATACCT	1465	0.0	42.84983	5
TACGGCT	1155	0.0	42.272728	7
TGATACC	1505	0.0	42.159466	4
CCGATGA	425	0.0	41.823532	18
ATACCTG	1520	0.0	41.595394	6
GAATCTG	1775	0.0	41.323944	1
ACGGCTG	1210	0.0	40.537193	8
AATCTGT	1805	0.0	40.512463	2
CGATGAA	435	0.0	40.344826	19
TACCTGT	1585	0.0	39.889587	7
TCGTTCA	85	0.0	39.705883	16
CGACCAC	995	0.0	39.346733	12
ATGATAC	4475	0.0	39.318436	3
GAATGAT	4705	0.0	39.117958	1
AATGATA	4420	0.0	38.789593	2
GATGAAT	470	0.0	38.776596	20