SRR2933313.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933313.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	466302
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34284	7.352316738937427	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCG	5643	1.210159939266827	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTC	4773	1.0235855732979915	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGC	3505	0.7516587962307689	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCT	1490	0.31953540838340816	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	1044	0.22388923916260278	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTGGACT	980	0.21016422833271142	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTC	897	0.19236460491269608	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTA	582	0.12481181723432455	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTT	566	0.12138056452685168	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCT	563	0.12073720464420054	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	482	0.1033664878126193	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCTTTGGACTCGTATGCCG	480	0.10293758122418518	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTT	20	7.028968E-4	45.000004	31
ACTTCGT	20	7.028968E-4	45.000004	30
CGATACT	20	7.028968E-4	45.000004	26
GGGTGAT	35	1.2098462E-7	45.0	7
ACGGGAC	25	3.887228E-5	45.0	5
CGTTTTT	14115	0.0	44.34644	1
ATAGTTA	85	0.0	42.352943	37
GCGACCA	510	0.0	41.47059	11
CGACCAC	505	0.0	41.435646	12
GTTTTTT	15530	0.0	40.812943	2
GAATGAT	2140	0.0	40.79439	1
AATGATA	2030	0.0	40.455666	2
ACACGAC	370	0.0	40.135136	26
AGACACG	370	0.0	40.135136	24
ATACGGC	1210	0.0	39.979336	6
GCGAGAC	375	0.0	39.600002	21
GACACGA	375	0.0	39.600002	25
GAGACAC	375	0.0	39.600002	23
GAATCTG	705	0.0	39.57447	1
GGAACAT	370	0.0	39.527027	8