##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933311.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 597818 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.369870094242728 31.0 27.0 31.0 16.0 33.0 2 28.689009029503964 31.0 30.0 33.0 16.0 34.0 3 28.94524420475797 31.0 30.0 33.0 16.0 34.0 4 31.792610794589656 35.0 28.0 35.0 19.0 37.0 5 33.43210642703967 35.0 33.0 37.0 28.0 37.0 6 32.64782759970426 35.0 33.0 37.0 17.0 37.0 7 31.553825746297367 33.0 30.0 35.0 23.0 37.0 8 32.7799815328411 35.0 32.0 35.0 27.0 37.0 9 32.45998949513063 34.0 31.0 37.0 25.0 39.0 10 30.650512363294514 34.0 27.0 37.0 15.0 39.0 11 31.549525106303257 35.0 27.0 39.0 15.0 39.0 12 32.47856371002546 35.0 30.0 39.0 21.0 39.0 13 32.76372909480812 35.0 31.0 39.0 22.0 39.0 14 33.02618188144218 36.0 31.0 39.0 18.0 41.0 15 33.50546989217454 36.0 31.0 39.0 22.0 41.0 16 33.596435704512075 36.0 31.0 39.0 23.0 41.0 17 31.529686292483664 34.0 27.0 38.0 17.0 41.0 18 32.38143548705459 35.0 29.0 39.0 19.0 39.0 19 32.1909343646394 35.0 30.0 37.0 18.0 39.0 20 32.21167646340525 34.0 30.0 37.0 23.0 39.0 21 32.71997664841139 35.0 31.0 37.0 23.0 39.0 22 33.29748853329943 35.0 31.0 38.0 25.0 39.0 23 34.31255666440288 35.0 33.0 39.0 27.0 40.0 24 32.5546571029979 35.0 31.0 38.0 22.0 39.0 25 31.667723287020465 35.0 30.0 37.0 18.0 39.0 26 31.329259072159086 34.0 27.0 37.0 20.0 39.0 27 32.75361397615997 35.0 31.0 38.0 22.0 40.0 28 32.680611825003595 35.0 31.0 38.0 22.0 40.0 29 33.194065752453085 35.0 31.0 38.0 22.0 40.0 30 32.10350641834137 35.0 30.0 38.0 19.0 40.0 31 32.15495184153036 35.0 30.0 38.0 21.0 40.0 32 32.246314095594315 35.0 30.0 38.0 20.0 40.0 33 32.428685653493204 35.0 31.0 38.0 18.0 40.0 34 31.911367673773622 35.0 31.0 38.0 15.0 40.0 35 31.463826783402308 35.0 30.0 38.0 13.0 40.0 36 30.979756380704494 35.0 29.0 38.0 10.0 40.0 37 31.245653359383624 35.0 30.0 38.0 10.0 40.0 38 31.08842992348842 35.0 29.0 38.0 10.0 40.0 39 30.635889183664595 35.0 28.0 38.0 10.0 40.0 40 30.35305895774299 35.0 26.0 38.0 10.0 40.0 41 29.697918095473874 34.0 25.0 38.0 8.0 40.0 42 30.286819734434225 35.0 26.0 38.0 9.0 40.0 43 30.2696874299536 35.0 26.0 38.0 8.0 40.0 44 30.415176525296996 35.0 27.0 38.0 8.0 40.0 45 30.672017236014973 35.0 28.0 38.0 9.0 40.0 46 30.427968043785903 35.0 27.0 38.0 8.0 40.0 47 30.508708335981854 35.0 28.0 38.0 8.0 40.0 48 30.279511490119067 34.0 27.0 38.0 8.0 40.0 49 30.103314052102814 34.0 27.0 38.0 8.0 40.0 50 30.250480915596384 34.0 27.0 38.0 8.0 40.0 51 28.427280543576806 33.0 23.0 36.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 9.0 9 22.0 10 32.0 11 56.0 12 59.0 13 100.0 14 185.0 15 263.0 16 517.0 17 942.0 18 1658.0 19 2786.0 20 4070.0 21 5900.0 22 8129.0 23 11436.0 24 15157.0 25 20816.0 26 26243.0 27 28843.0 28 30293.0 29 33458.0 30 38617.0 31 45039.0 32 52066.0 33 59475.0 34 65251.0 35 67250.0 36 49523.0 37 24649.0 38 4900.0 39 74.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.78981897500577 2.722902287987314 38.30061992111312 34.1866588158938 2 33.69185939533437 11.819316246750683 38.38910839084805 16.0997159670669 3 14.759341471819182 11.70841292834943 57.54928757581739 15.982958024013996 4 13.430508950884718 3.2575131561779673 64.05862653851172 19.253351354425593 5 19.449564917750887 3.815375247985173 56.91314078866812 19.821919045595816 6 15.978107049302631 10.228196541422307 59.763841169051446 14.029855240223613 7 59.86922441278115 1.580581380955408 35.116373210575794 3.433820995687651 8 60.75946190981202 7.265087367727302 27.663436029025558 4.312014693435126 9 56.32583829861262 2.91075210181025 27.952152661846917 12.811256937730212 10 32.03934976865869 18.219926465914373 34.679116386592575 15.06160737883436 11 24.159359537518107 17.546142806004504 41.7852925137751 16.509205142702292 12 19.518816763630404 15.863189131140246 45.97101458972463 18.646979515504718 13 17.797891666025446 17.156224804204623 50.23836686081717 14.807516668952758 14 16.575111488780866 18.905252100137503 45.70872740533072 18.810909005750915 15 14.054946488730685 16.64369423470019 51.13312078257931 18.16823849398981 16 16.1231344656735 17.241535049128665 43.52210873543453 23.113221749763305 17 16.633657735297362 17.84439411325855 45.939734166585815 19.582213984858267 18 17.01337196270437 16.709098755808625 45.36046087605258 20.91706840543443 19 16.90581414410406 19.498576489834697 41.90874145642988 21.68686790963136 20 18.835331154297798 19.604461558534535 45.7711209766183 15.789086310549363 21 19.532366037824218 20.977956501811587 42.3925007276462 17.097176732717983 22 18.016352803027008 16.932243592531506 43.92791786128889 21.1234857431526 23 18.091124723578076 21.026633523915304 43.09221201101339 17.79002974149323 24 18.31895326002228 18.155191044766134 42.952537394324025 20.57331830088756 25 16.999989963500596 22.19705662927513 40.668062855250255 20.134890551974014 26 17.025917586957902 17.825324764393176 43.63736120357701 21.511396445071913 27 17.69702484702702 18.74332990977187 42.470785422988264 21.08885982021284 28 14.784767270306348 19.1536554603575 45.230655483776 20.830921785560154 29 17.94843915706787 16.95415661622768 43.72936244810293 21.368041778601516 30 16.870184571224016 19.067341565493177 44.98743764824746 19.075036215035347 31 18.7065294119615 17.83084483906473 40.30390520191764 23.158720547056127 32 18.86861887731718 19.87009424272939 40.28266127818165 20.97862560177178 33 17.065059934628934 18.751191834304084 37.73874322954478 26.445005001522205 34 18.006149028634134 19.991368610513568 40.028570568300054 21.973911792552247 35 16.42891314747967 22.044334563362096 40.29989060215651 21.22686168700173 36 18.384859606100854 23.224292343154605 36.27675981653279 22.114088234211753 37 17.905951309595896 22.12111378379373 37.68973165746097 22.283203249149405 38 18.873804402008638 21.967889892910552 34.533587145251566 24.624718559829244 39 19.668862429702685 21.746250531098095 34.29655848435477 24.28832855484445 40 19.57284658541563 21.03633547333804 38.08634065886273 21.3044772823836 41 18.23464666503852 24.896707693645894 34.205226339789036 22.663419301526552 42 18.738980760030643 22.24389362648833 38.862496612681454 20.154629000799574 43 20.28108889327521 22.194045679454284 34.996604317702044 22.528261109568465 44 20.704294618094472 21.4418100492123 35.07656176294457 22.777333569748652 45 19.211699881903858 20.371417387900664 35.10131846147155 25.31556426872393 46 21.530465793937285 22.446965464405555 34.21258643935111 21.809982302306054 47 16.80160182530469 21.114285618700006 40.46047459260176 21.62363796339354 48 19.434008343676503 22.42488516571933 34.646330488543335 23.494776002060828 49 18.257897888655076 20.566460026295626 38.8129832156275 22.362658869421796 50 19.211699881903858 21.120140243351656 36.37177201087957 23.296387863864922 51 18.834996604317702 20.244622945444934 35.34286354709962 25.57751690313774 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 115.0 1 554.0 2 993.0 3 21532.0 4 42071.0 5 27854.0 6 13637.0 7 12738.0 8 11839.0 9 11536.0 10 11233.0 11 10718.0 12 10203.0 13 9635.0 14 9067.0 15 8292.5 16 7518.0 17 6966.5 18 6415.0 19 5918.0 20 5421.0 21 5195.5 22 4970.0 23 4788.5 24 4607.0 25 4672.0 26 5276.5 27 5816.0 28 6280.0 29 6744.0 30 7580.0 31 8416.0 32 9108.5 33 9801.0 34 11114.5 35 12428.0 36 13132.0 37 13836.0 38 14761.5 39 15687.0 40 16409.5 41 17132.0 42 18422.5 43 19713.0 44 22226.0 45 24739.0 46 44503.5 47 64268.0 48 54509.5 49 44751.0 50 42092.0 51 39433.0 52 35572.5 53 31712.0 54 29900.0 55 28088.0 56 26688.0 57 25288.0 58 24118.0 59 22948.0 60 20794.0 61 18640.0 62 17144.5 63 15649.0 64 13865.5 65 12082.0 66 10472.0 67 8862.0 68 7713.5 69 6565.0 70 5437.0 71 4309.0 72 3668.5 73 3028.0 74 2685.0 75 1912.0 76 1482.0 77 1068.0 78 654.0 79 489.0 80 324.0 81 233.0 82 142.0 83 105.5 84 69.0 85 46.0 86 23.0 87 18.5 88 14.0 89 9.5 90 5.0 91 2.5 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 597818.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.69905933105127 #Duplication Level Percentage of deduplicated Percentage of total 1 78.25394284839193 34.196236914205734 2 7.295838834767237 6.376425882205629 3 3.4785508129811604 4.5602819508762105 4 2.340676265004728 4.091414039169003 5 1.6901604633979557 3.6929211184512187 6 1.366190275728927 3.58207379499502 7 1.1049934600750608 3.3801022340570595 8 0.8683970801028988 3.0358508421062607 9 0.720385009202523 2.833213253250687 >10 2.784167102634358 17.501660843042206 >50 0.05363402893690628 1.5894775678812119 >100 0.036799990590658506 3.105220890474719 >500 0.0023489355696165006 0.6769521824477144 >1k 0.0023489355696165006 1.9730324791937048 >5k 0.0011744677848082503 4.39514241073142 >10k+ 3.914892616027501E-4 5.0099935969121345 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29285 4.898648083530439 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCG 9813 1.6414694773325662 No Hit GAATCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTC 8290 1.3867096674907748 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGC 7588 1.2692826244776838 No Hit GAACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCT 2973 0.4973085454101416 TruSeq Adapter, Index 16 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC 2373 0.3969435513818587 TruSeq Adapter, Index 13 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTCCCCTAT 2036 0.34057187973597314 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTC 1765 0.29524035743319876 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTA 1275 0.21327561231010106 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCT 1111 0.18584251394237042 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCTTCCCCTATCGTATGCCG 791 0.13231451712728623 No Hit GAATGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTT 790 0.1321472421372391 No Hit GAATCTTTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTC 621 0.10387776881927274 No Hit CTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCT 618 0.10337594384913133 TruSeq Adapter, Index 16 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.130809042216862 0.0 2 0.0 0.0 0.0 0.7360099562074076 0.0 3 0.0 0.0 0.0 0.9477800936070845 0.0 4 0.0 0.0 0.0 1.8187809667825325 0.0 5 0.0 0.0 0.0 3.7825893499359338 0.0 6 0.0 0.0 0.0 4.351324316096203 0.0 7 0.0 0.0 0.0 4.91671378245553 0.0 8 0.0 0.0 0.0 5.684338711781846 0.0 9 0.0 0.0 0.0 5.993295618398911 0.0 10 0.0 0.0 0.0 8.407742824739302 0.0 11 0.0 0.0 0.0 9.10745410810648 0.0 12 0.0 0.0 0.0 11.110739388911007 0.0 13 0.0 0.0 0.0 11.40045967167265 0.0 14 0.0 0.0 0.0 11.577269336152474 0.0 15 0.0 0.0 0.0 12.021049884747532 0.0 16 0.0 0.0 0.0 12.303410067947102 0.0 17 0.0 0.0 0.0 12.569210027132003 0.0 18 0.0 0.0 0.0 12.814936987511249 0.0 19 0.0 0.0 0.0 13.425323426193255 0.0 20 0.0 0.0 0.0 13.668541261721796 0.0 21 0.0 0.0 0.0 13.93066117112566 0.0 22 0.0 0.0 0.0 14.304018948910873 0.0 23 0.0 0.0 0.0 14.592735581732233 0.0 24 0.0 0.0 0.0 14.83076789256931 0.0 25 0.0 0.0 0.0 15.045214429809741 0.0 26 0.0 0.0 0.0 15.250962667567721 0.0 27 0.0 0.0 0.0 15.462732804967398 0.0 28 0.0 0.0 0.0 15.655935418471843 0.0 29 0.0 0.0 0.0 15.874898380443547 0.0 30 0.0 0.0 0.0 16.12898909032515 0.0 31 0.0 0.0 0.0 16.32637357858077 0.0 32 0.0 0.0 0.0 16.538980090930686 0.0 33 0.0 0.0 0.0 16.753426628171116 0.0 34 0.0 0.0 0.0 16.99095711403805 0.0 35 0.0 0.0 0.0 17.25876437310352 0.0 36 0.0 0.0 0.0 17.468192660642536 0.0 37 0.0 0.0 0.0 17.686821072634146 0.0 38 0.0 0.0 0.0 17.929369808202498 0.0 39 0.0 0.0 0.0 18.26877076300814 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATGG 25 3.8885526E-5 45.0 2 CGTTTTT 12555 0.0 44.408604 1 TACGGCT 1130 0.0 41.41593 7 TGATACC 1350 0.0 41.333332 4 GAATGAT 3985 0.0 41.329987 1 ACGGCTG 1135 0.0 41.23348 8 GATACCT 1355 0.0 41.18081 5 CGACCAC 760 0.0 40.855263 12 GCGACCA 765 0.0 40.588234 11 AATGATA 3810 0.0 40.15748 2 ATGATAC 3850 0.0 40.149353 3 CCGATGA 210 0.0 39.642857 18 ATACGGC 2525 0.0 39.564358 6 AATGATC 360 0.0 39.375 2 CGTCACG 40 3.4545155E-7 39.375 37 TCACGTC 40 3.4545155E-7 39.375 39 CAAGACG 120 0.0 39.374996 38 ATACCTG 1430 0.0 39.335667 6 ACACGAC 275 0.0 39.272728 26 GTTTTTT 14430 0.0 39.121616 2 >>END_MODULE