SRR2933310.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933310.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	752491
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18725	2.488401854640122	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTC	16471	2.1888633883993296	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCG	14212	1.8886604623842678	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGC	11748	1.5612146856241471	No Hit
GAACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCT	4306	0.5722327576010876	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTC	3005	0.39934032433610506	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCGATTGCT	2811	0.3735592850944397	No Hit
GCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGC	2791	0.3709014459973608	TruSeq Adapter, Index 27 (95% over 22bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTA	2457	0.3265155330761431	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCT	2340	0.3109671743582315	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTT	1468	0.19508538972559142	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCGATTGCTCGT	1023	0.13594846981558584	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	50	2.1827873E-11	45.000004	14
GTTACGT	40	6.8102963E-9	45.0	22
CGTACAT	20	7.031732E-4	45.0	35
TTCGGTA	20	7.031732E-4	45.0	25
CGTTTTT	15405	0.0	44.006817	1
GATACCT	1665	0.0	42.162163	5
CGATGAA	390	0.0	42.115383	19
CCGATGA	385	0.0	42.07792	18
TGATACC	1685	0.0	41.928783	4
TAATCGT	65	0.0	41.538464	21
TACGGCT	1400	0.0	41.464287	7
TCAAGCG	290	0.0	41.12069	17
ATACCTG	1720	0.0	40.944763	6
CTACGAA	55	6.002665E-11	40.909092	11
GCTACGA	55	6.002665E-11	40.909092	10
ACGGCTG	1445	0.0	40.17301	8
CACGACC	315	0.0	40.0	27
GGCGACT	445	0.0	39.94382	10
GAATCTG	2000	0.0	39.9375	1
ATGATAC	5660	0.0	39.75265	3