SRR2933309.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933309.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	561407
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29650	5.281373406459129	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCG	6751	1.2025143968635945	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTC	5309	0.9456597441784658	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGC	4846	0.8631883820472492	No Hit
GAACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCT	1988	0.3541102978765851	No Hit
GCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGC	1613	0.2873138382670683	TruSeq Adapter, Index 27 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCGATTGCT	1244	0.22158612201130376	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTC	1039	0.18507072409143455	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTA	881	0.15692714910929148	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCT	676	0.1204117511894223	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	12955	0.0	44.322655	1
ATACGAA	75	0.0	42.0	19
CGTTTGG	255	0.0	41.47059	2
CCGATGA	125	0.0	41.399998	18
GATACCT	980	0.0	41.09694	5
TACGGCT	625	0.0	41.04	7
TGATACC	995	0.0	40.703518	4
CGATGAA	100	0.0	40.5	19
GAATGAT	2745	0.0	39.836067	1
ATGATAC	2530	0.0	39.664032	3
CGACCAC	545	0.0	39.63303	12
AATGATA	2515	0.0	39.63221	2
GTTTTTT	14850	0.0	39.439392	2
TACGAAA	80	0.0	39.375004	20
CTACGGC	75	0.0	39.0	6
ATACGGC	1550	0.0	38.758068	6
GCGATTT	180	0.0	38.75	9
CGGGTAT	70	0.0	38.571426	6
GCGACCA	560	0.0	38.571426	11
GTACGGG	35	6.2425806E-6	38.571426	3