SRR2933308.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933308.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	821991
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29723	3.6159763306410895	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTC	15862	1.929704826451871	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCG	14411	1.753182212457314	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGC	11926	1.4508674669187376	No Hit
GAACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCT	3658	0.44501703789944175	RNA PCR Primer, Index 40 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTC	2749	0.3344318855072622	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAAGAAGCT	2708	0.32944399634545873	No Hit
GCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC	2470	0.3004899080403557	RNA PCR Primer, Index 40 (95% over 24bp)
GAATGACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCT	2289	0.27847020222849156	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTA	2026	0.24647471809302046	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTT	1612	0.19610920314212685	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGT	1090	0.1326048582040436	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	830	0.10097434156821669	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGTG	45	3.8380676E-10	45.0	7
TCGCGCG	20	7.032113E-4	45.0	1
CGTTTTT	28765	0.0	44.616722	1
CGATGAA	395	0.0	42.72152	19
TACGGCT	1545	0.0	42.524273	7
CCGATGA	405	0.0	42.222225	18
TGATACC	1645	0.0	42.12766	4
GATACCT	1645	0.0	42.12766	5
CGACCTG	155	0.0	42.096775	12
ACGGCTG	1580	0.0	41.724686	8
ATACGGT	60	3.6379788E-12	41.249996	6
GCGACCT	165	0.0	40.90909	11
CGGCTGT	1630	0.0	40.858894	9
ACGGTGA	50	1.0804797E-9	40.5	8
CGCTTTT	625	0.0	40.32	1
ACCCGAA	45	1.9272193E-8	40.0	39
ATACCTG	1745	0.0	39.842407	6
GAATGAT	5765	0.0	39.61405	1
ATGATAC	5420	0.0	39.603317	3
CGCGGGT	80	0.0	39.375	4