SRR2933307.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933307.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	512662
Sequences flagged as poor quality	0
Sequence length	51
%GC	32

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31374	6.119821636867956	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCG	6645	1.2961756478927637	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGC	5118	0.9983185802731624	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTC	4517	0.8810873440980607	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAAGAAGCT	1447	0.28225224416867256	No Hit
GAACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCT	1346	0.26255115456187506	RNA PCR Primer, Index 40 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC	1098	0.21417620186399616	RNA PCR Primer, Index 40 (95% over 24bp)
GAATGATCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTC	869	0.1695073947357128	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTA	739	0.1441495566279537	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCC	713	0.13907798900640186	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTT	559	0.10903870386336416	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCT	549	0.10708810093199808	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCGAAGAAGCTCGTATGCCG	519	0.10123629213789982	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTG	80	0.0	45.000004	17
CGTTCGG	20	7.029625E-4	45.000004	2
CGCCTGG	40	6.8030204E-9	45.000004	2
TCTCGCG	40	6.8030204E-9	45.000004	1
TAGGGCG	20	7.029625E-4	45.000004	5
CGGCGAT	25	3.887772E-5	45.0	31
GTGCTCG	25	3.887772E-5	45.0	1
CCGGTGA	25	3.887772E-5	45.0	18
GCCCGCG	25	3.887772E-5	45.0	1
CGTTTTT	19075	0.0	44.52818	1
GCGACCT	100	0.0	42.75	11
CACCGGT	100	0.0	42.75	16
CCGATGA	90	0.0	42.5	18
ACGGCTG	845	0.0	42.337276	8
TACGGCT	840	0.0	42.32143	7
CGACCAC	555	0.0	41.756756	12
GCGACCA	575	0.0	41.086956	11
GAATGAT	3030	0.0	40.915844	1
CTCGCGG	55	6.002665E-11	40.909092	2
CGGCTGT	820	0.0	40.884148	9