SRR2933306.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933306.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	801893
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTC	21511	2.68252746937559	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20770	2.5901211258858727	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCG	16704	2.083070933403833	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGC	14621	1.8233105913133048	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCT	5929	0.7393754528347298	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTC	3744	0.466895209211204	No Hit
GCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	3219	0.40142512779136363	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCATCCTT	3047	0.3799758820690541	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCT	2768	0.3451832102287961	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTA	2661	0.3318397841108477	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTT	2004	0.2499086536483047	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCCATCCTTCGT	1307	0.1629893265061548	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCTCG	30	2.1646774E-6	45.000004	1
CGGCTAT	30	2.1646774E-6	45.000004	31
AAGACGC	25	3.8897466E-5	45.0	39
CTGCGCG	20	7.03201E-4	45.0	1
ATCCGGC	20	7.03201E-4	45.0	6
TCGTAAC	25	3.8897466E-5	45.0	34
CGTTTTT	22705	0.0	44.64325	1
CGATGAA	540	0.0	44.166668	19
CGGCTGT	1890	0.0	42.61905	9
CCGATGA	555	0.0	42.567566	18
ACGGCTG	1880	0.0	42.486702	8
TACGGCT	1905	0.0	42.04724	7
ACGGTGA	70	0.0	41.785717	8
GATACCT	2135	0.0	41.100704	5
TGATACC	2155	0.0	40.61485	4
ATACCTG	2180	0.0	40.561928	6
CGCTTTT	555	0.0	40.54054	1
GCGATCG	50	1.0804797E-9	40.5	9
GAATGAT	6965	0.0	40.05743	1
TGATCCG	45	1.9270374E-8	40.0	4