SRR2933305.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933305.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	446705
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19622	4.392608097066296	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCG	6961	1.558299101196539	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTC	5804	1.299291478716379	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGC	5205	1.1651985090831758	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCT	2210	0.49473366091716015	No Hit
GCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	1455	0.3257183152192163	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCATCCTT	1232	0.2757972263574395	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTC	1097	0.24557593937833694	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTA	766	0.1714778209332781	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTT	632	0.14148039533920595	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCT	610	0.1365554448685374	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTCCATCCTTCGTATGCCG	577	0.12916801916253454	No Hit
GAATCTTTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTC	548	0.12267603899665327	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	501	0.11215455390022498	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACCG	45	3.8380676E-10	45.0	11
CGACCGC	45	3.8380676E-10	45.0	12
CTACGGC	50	2.1827873E-11	45.0	6
TTCGATG	20	7.0286513E-4	45.0	1
ACGACCA	20	7.0286513E-4	45.0	28
AACACGT	20	7.0286513E-4	45.0	41
CGTTTTT	14495	0.0	44.549843	1
ACGGCTG	790	0.0	43.00633	8
TACGGCT	795	0.0	42.73585	7
CGGCTGT	795	0.0	41.603775	9
ATCCGGC	60	3.6379788E-12	41.249996	6
GAATGAT	2880	0.0	41.171875	1
CACCGGT	115	0.0	41.086956	16
GATACCT	955	0.0	40.994766	5
TGTTTCG	55	6.002665E-11	40.909092	1
CTCGCAT	55	6.002665E-11	40.909092	21
GCTCGCA	55	6.002665E-11	40.909092	20
AATGATA	2710	0.0	40.59963	2
CCGCCTC	50	1.0786607E-9	40.5	15
ATGATAC	2735	0.0	40.47532	3