SRR2933304.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933304.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	565073
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCG	15631	2.7661912708623486	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13690	2.4226958286805425	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTC	12037	2.130167252726639	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGC	11441	2.0246941545605615	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCGTGTTT	3524	0.6236362381497612	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTC	2971	0.5257727762607664	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCT	2944	0.5209946325519004	No Hit
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	2655	0.4698507980384835	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTA	2598	0.45976360576421105	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCT	2336	0.4133979149596601	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGT	1052	0.18617063636025788	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTT	767	0.13573467498889524	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTAT	724	0.12812503871181244	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTA	45	3.8380676E-10	45.000004	6
TTGCGAT	20	7.03024E-4	45.0	17
ATACCGA	20	7.03024E-4	45.0	13
ACATACG	60	0.0	44.999996	17
CGTTTTT	12865	0.0	44.160515	1
GATACCT	1635	0.0	42.66055	5
TGATACC	1630	0.0	42.653378	4
TATGGGC	85	0.0	42.35294	4
TACGGCT	1515	0.0	42.17822	7
ACGGCTG	1525	0.0	41.90164	8
CGGCTGT	1560	0.0	41.25	9
ACCCGTC	100	0.0	40.5	17
CACCCGT	100	0.0	40.5	16
GGCGACT	445	0.0	40.44944	10
ATGATAC	5740	0.0	40.374565	3
ACACGCG	145	0.0	40.34483	36
CCGATGA	415	0.0	40.12048	18
ATACGGC	4070	0.0	40.024567	6
AATGATA	5690	0.0	39.8594	2
GAATGAT	5975	0.0	39.80335	1