SRR2933303.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933303.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	394374
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25176	6.383787977909295	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCG	7397	1.8756307464488025	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGC	4528	1.1481487116290627	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTC	3477	0.8816504130596845	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCGTGTTT	1940	0.4919188384629818	No Hit
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	1592	0.40367772723353973	TruSeq Adapter, Index 14 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCT	1168	0.29616556872410454	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTC	967	0.24519871999675436	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTA	901	0.2284633368325498	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTGCGTGTTTCGTATGCCG	638	0.1617753705873105	No Hit
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	547	0.13870082713363457	TruSeq Adapter, Index 21 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCT	546	0.1384472607220557	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGT	414	0.10497649439364665	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	395	0.10015873257364835	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTC	20	7.027643E-4	45.000004	17
ATAAGCG	20	7.027643E-4	45.000004	33
TGCTACG	55	1.8189894E-12	45.000004	4
ATACAGC	20	7.027643E-4	45.000004	28
GTGCACT	25	3.8861293E-5	45.0	39
CGGGATC	85	0.0	45.0	6
CACCGGT	140	0.0	45.0	16
TATACGG	25	3.8861293E-5	45.0	27
CGTTTTT	10525	0.0	44.18765	1
GATACCT	1005	0.0	42.985073	5
TGATACC	1035	0.0	41.95652	4
TACGGCT	620	0.0	41.370968	7
TAGGGAT	60	3.6379788E-12	41.249996	5
GAATGAT	2925	0.0	41.23077	1
ATGATAC	2810	0.0	40.99644	3
ACATACG	55	6.002665E-11	40.909092	17
AATGATA	2790	0.0	40.887096	2
TGATACG	1785	0.0	40.714287	4
CGGGCTA	50	1.0768417E-9	40.5	6
CGGCTGT	640	0.0	40.42969	9